I have the application with the following requirement.
The first requirement is working fine, but I am quite struggling in the 2nd requirement.
The code I have so far for 1st requirement:
import numpy as np
class PointBrowser(object):
"""
Click on a point to select and highlight it -- the data that
generated the point will be shown in the lower axes. Use the 'n'
and 'p' keys to browse through the next and previous points
"""
def __init__(self):
self.lastind = 0
self.text = ax.text(0.05, 0.95, 'selected: none',
transform=ax.transAxes, va='top')
self.selected, = ax.plot([xs[0]], [ys[0]], 'o', ms=12, alpha=0.4,
color='yellow', visible=False)
def onpress(self, event):
if self.lastind is None:
return
if event.key not in ('n', 'p'):
return
if event.key == 'n':
inc = 1
else:
inc = -1
self.lastind += inc
self.lastind = np.clip(self.lastind, 0, len(xs) - 1)
self.update()
def onpick(self, event):
if event.artist != line:
return True
N = len(event.ind)
if not N:
return True
# the click locations
x = event.mouseevent.xdata
y = event.mouseevent.ydata
distances = np.hypot(x - xs[event.ind], y - ys[event.ind])
indmin = distances.argmin()
dataind = event.ind[indmin]
self.lastind = dataind
self.update()
def update(self):
if self.lastind is None:
return
dataind = self.lastind
ax2.cla()
ax2.plot(X[dataind])
ax2.text(0.05, 0.9, 'mu=%1.3f\nsigma=%1.3f' % (xs[dataind], ys[dataind]),
transform=ax2.transAxes, va='top')
ax2.set_ylim(-0.5, 1.5)
self.selected.set_visible(True)
self.selected.set_data(xs[dataind], ys[dataind])
self.text.set_text('selected: %d' % dataind)
fig.canvas.draw()
if __name__ == '__main__':
import matplotlib.pyplot as plt
X = np.random.rand(100, 200)
xs = np.mean(X, axis=1)
ys = np.std(X, axis=1)
fig, (ax, ax2) = plt.subplots(2, 1)
ax.set_title('click on point to plot time series')
line, = ax.plot(xs, ys, 'o', picker=5) # 5 points tolerance
browser = PointBrowser()
fig.canvas.mpl_connect('pick_event', browser.onpick)
fig.canvas.mpl_connect('key_press_event', browser.onpress)
plt.show()
Questions:
However, before coming up with some sort of convoluted solution to my problem, I figured I would ask the experts and see if there is something I'm missing. Unfortunately, I cannot change this paradigm easily without significant re-factoring.
Thanks in advance. I really appreciate example code snippets.
This will write the data from each point to a csv file using a threading.Thread with the csv module and open the file with notepad after using a subprocess, we just need to add a new method to do the writing and change update slightly:
import csv
import threading
from subprocess import call
def write_csv(self, dataind, xs, ys):
fle = 'mu=%1.3f_sigma=%1.3f.csv' % (xs[dataind], ys[dataind])
print("Writing to {}".format(fle))
with open(fle, "w") as f:
wr = csv.writer(f)
wr.writerow(X[dataind])
call(["notepad", fle])
def update(self):
if self.lastind is None:
return
dataind = self.lastind
ax2.cla()
ax2.plot(X[dataind])
ax2.text(0.05, 0.9, 'mu=%1.3f\nsigma=%1.3f' % (xs[dataind], ys[dataind]),
transform=ax2.transAxes, va='top')
ax2.set_ylim(-0.5, 1.5)
self.selected.set_visible(True)
self.selected.set_data(xs[dataind], ys[dataind])
self.text.set_text('selected: %d' % dataind)
t = threading.Thread(target=self.write_csv, args=(dataind, xs, ys))
t.start()
fig.canvas.draw()
If you want the option of selecting multiple point and writing all those to a single file, this will allow you to choose a new file for each or if you hit ctrl while picking the points each point you pick while it is held will have it's data written to a single file, you can change the naming convention and how it is written to the csv, this is just a runnable example, I have added a few prints that should hopefully help to see what is happening:
import csv
import threading
from subprocess import call
class PointBrowser(object):
"""
Click on a point to select and highlight it -- the data that
generated the point will be shown in the lower axes. Use the 'n'
and 'p' keys to browse through the next and previous points
"""
def __init__(self):
self.lastind = 0
self.text = ax.text(0.05, 0.95, 'selected: none',
transform=ax.transAxes, va='top')
self.selected, = ax.plot([xs[0]], [ys[0]], 'o', ms=12, alpha=0.4,
color='yellow', visible=False)
self.cntrl = False
self.lock = threading.Lock()
def onpress(self, event):
if event.key == "control":
self.cntrl = True
with self.lock:
self.mult = []
if self.lastind is None:
return
if event.key not in ('n', 'p'):
return
if event.key == 'n':
inc = 1
else:
inc = -1
self.lastind += inc
self.lastind = np.clip(self.lastind, 0, len(xs) - 1)
self.update()
def onpick(self, event):
if event.artist != line:
return True
N = len(event.ind)
if not N:
return True
# the click locations
x = event.mouseevent.xdata
y = event.mouseevent.ydata
distances = np.hypot(x - xs[event.ind], y - ys[event.ind])
indmin = distances.argmin()
dataind = event.ind[indmin]
self.lastind = dataind
self.update()
def write_csv(self, dataind, xs, ys, rows=False):
fle = 'mu=%1.3f_sigma=%1.3f.csv' % (xs[dataind], ys[dataind])
print("Writing to {}".format(fle))
with open(fle, "w") as f:
wr = csv.writer(f)
wr.writerow(X[dataind]) if not rows else wr.writerows(X[dataind])
call(["gedit", fle])
def write_csv_mult(self):
print("Writing multiple data")
with self.lock:
with open('multi.csv', "w") as f:
wr = csv.writer(f)
wr.writerows(self.mult)
call(["gedit", 'multi.csv'])
def update(self):
if self.lastind is None:
return
dataind = self.lastind
ax2.cla()
ax2.plot(X[dataind])
ax2.text(0.05, 0.9, 'mu=%1.3f\nsigma=%1.3f' % (xs[dataind], ys[dataind]),
transform=ax2.transAxes, va='top')
if self.cntrl:
with self.lock:
self.mult.append(X[dataind])
ax2.set_ylim(-0.5, 1.5)
self.selected.set_visible(True)
self.selected.set_data(xs[dataind], ys[dataind])
self.text.set_text('selected: %d' % dataind)
if not self.cntrl:
t = threading.Thread(target=self.write_csv, args=(dataind, xs, ys))
t.start()
fig.canvas.draw()
def release(self, event):
if event.key == "control":
print("Finished selecting")
t = threading.Thread(target=self.write_csv_mult)
t.start()
self.cntrl = False
if __name__ == '__main__':
import matplotlib.pyplot as plt
import numpy as np
X = np.random.rand(100, 200)
xs = np.mean(X, axis=1)
ys = np.std(X, axis=1)
fig, (ax, ax2) = plt.subplots(2, 1)
ax.set_title('click on point to plot time series')
line, = ax.plot(xs, ys, 'o', picker=5) # 5 points tolerance
browser = PointBrowser()
fig.canvas.mpl_connect('pick_event', browser.onpick)
fig.canvas.mpl_connect('key_release_event', browser.release)
fig.canvas.mpl_connect('key_press_event', browser.onpress)
plt.show()
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