Ontograf protege is not showing individuals in case of joined ontology

Question

First of all, it has been working for the last 4 months, but now when I need to write the report it stopped.

When i have one ontology with instances, the Ontograf shows the individuals, but when i create a new ontology and load another ontology, the ontograf doesn't show the individuals from the other ontology.

i tried repeating everything from scratch, i tried to make each ontology just one class and one individuals, but i sitll have the problem, i installed protege Protege-5.0.0-beta-24 and Protege-5.0.0-beta-23 and Protege-5.0.0-beta-21 and Protege-5.0.0-beta-17 but still have the same problem (in the past i was working with Protege-5.0.0-beta-23 and it was working)

just yesterday everythign was fine, today nothing is working,

Update

I uploaded a minimum example to show you the problem:

the file contains three ontologies, the first.ttl has one class and one instances, the second.ttl has one class, the third join them together and make the class of the first as a sub class of the second. in this joined ontology i can't see the instances that is in first.ttl using ontograf

http://www.mediafire.com/download/6rr3xwb196mxab1/StackoverflowMinimumExample.zip

Answer 1

It is a bug in protege and this is the ticket to try to solve it

https://github.com/protegeproject/ontograf/issues/13