There are many questions on re indexing, I tried the solutions but they dint work for my code, may be i got something wrong, I have a data set with two variables patnum(ID), vrddat(Date) and I'm using below code to get the data frame after applying certain conditions.
data_3 = data_2.loc[(((data_2.groupby('patnum').first()['vrddat']> datetime.date(2012,1,1)) &
(data_2.groupby('patnum').first()['vrddat']> datetime.date(2012,3,31)))),['patnum','vrddat','drug']].reset_index(drop = True)
Above code is throwing below error.
IndexingError
IndexingError: Unalignable boolean Series key provided
How do I get a new data frame having all the variables as input data after applying conditions, In the above code conditions work but when i'm using loc to get a new data frame with all the variables it's throwing Indexing error, I used reset_index as well but it dint work.
Thanks.
There is problem you want use boolean indexing in DataFrame
data_2
by mask created from Series
s
, so need isin
for check values in column vrddat
by vals
:
data_2 = pd.DataFrame({'patnum':[1,2,3,3,1],
'vrddat':pd.date_range('2012-01-10', periods=5, freq='1m'),
'drug':[7,8,9,7,5],
'zzz ':[1,3,5,6,7]})
print (data_2)
drug patnum vrddat zzz
0 7 1 2012-01-31 1
1 8 2 2012-02-29 3
2 9 3 2012-03-31 5
3 7 3 2012-04-30 6
4 5 1 2012-05-31 7
s = data_2.groupby('patnum')['vrddat'].first()
print (s)
patnum
1 2012-01-31
2 2012-02-29
3 2012-03-31
Name: vrddat, dtype: datetime64[ns]
mask = (s > datetime.date(2012,1,1)) & (s < datetime.date(2012,3,31))
print (mask)
patnum
1 True
2 True
3 False
Name: vrddat, dtype: bool
vals = s[mask]
print (vals)
patnum
1 2012-01-31
2 2012-02-29
Name: vrddat, dtype: datetime64[ns]
data_3 = data_2.loc[data_2['vrddat'].isin(vals), ['patnum','vrddat','drug']]
.reset_index(drop = True)
print (data_3)
patnum vrddat drug
0 1 2012-01-31 7
1 2 2012-02-29 8
Another faster solution for s
is drop_duplicates
:
s = data_2.drop_duplicates(['patnum'])['vrddat']
print (s)
0 2012-01-31
1 2012-02-29
2 2012-03-31
Name: vrddat, dtype: datetime64[ns]
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