I'm trying to create subplots on one image, including confusion matrix(heatmap), ROC and feature importance. I want to display an annotated heatmap. But there is an error about trace1 when I ran the code. Can someone help me to figure out what's wrong? The error massage is
ValueError: Invalid element(s) received for the 'data' property of Invalid elements include: ......
#threshold_plot - if True returns threshold plot for model
def coupon_use_prediction(algorithm,training_x,testing_x,
training_y,testing_y,cols,cf,threshold_plot) :
#model
algorithm.fit(training_x,training_y)
predictions = algorithm.predict(testing_x)
probabilities = algorithm.predict_proba(testing_x)
#coeffs
if cf == "coefficients" :
coefficients = pd.DataFrame(algorithm.coef_.ravel())
elif cf == "features" :
coefficients = pd.DataFrame(algorithm.feature_importances_)
column_df = pd.DataFrame(cols)
coef_sumry = (pd.merge(coefficients,column_df,left_index= True,
right_index= True, how = "left"))
coef_sumry.columns = ["coefficients","features"]
coef_sumry = coef_sumry.sort_values(by = "coefficients",ascending = False)
print (algorithm)
print ("\n Classification report : \n",classification_report(testing_y,predictions))
print ("Accuracy Score : ",accuracy_score(testing_y,predictions))
#confusion matrix
conf_matrix = confusion_matrix(testing_y,predictions)
#roc_auc_score
model_roc_auc = roc_auc_score(testing_y,predictions)
print ("Area under curve : ",model_roc_auc,"\n")
fpr,tpr,thresholds = roc_curve(testing_y,probabilities[:,1])
#plot confusion matrix(x = predicted, y = actual)
trace1 = ff.create_annotated_heatmap(z = conf_matrix,
x = ["Not use","Use"],
y = ["Not use","Use"],
showscale = False,name = "matrix")
#plot roc curve
trace2 = go.Scatter(x = fpr,y = tpr,
name = "Roc : " + str(model_roc_auc),
line = dict(color = ('rgb(22, 96, 167)'),width = 2))
trace3 = go.Scatter(x = [0,1],y=[0,1],
line = dict(color = ('rgb(205, 12, 24)'),width = 2,
dash = 'dot'))
#plot coeffs
trace4 = go.Bar(x = coef_sumry["features"],y = coef_sumry["coefficients"],
name = "coefficients",
marker = dict(color = coef_sumry["coefficients"],
colorscale = "Picnic",
line = dict(width = .6,color = "black")))
#subplots
fig = tls.make_subplots(rows=2, cols=2, specs=[[{}, {}], [{'colspan': 2}, None]],
subplot_titles=('Confusion Matrix',
'Receiver operating characteristic',
'Feature Importances'))
fig.append_trace(trace1,1,1)
fig.append_trace(trace2,1,2)
fig.append_trace(trace3,1,2)
fig.append_trace(trace4,2,1)
fig['layout'].update(showlegend=False, title="Model performance" ,
autosize = False,height = 900,width = 800,
plot_bgcolor = 'rgba(240,240,240, 0.95)',
paper_bgcolor = 'rgba(240,240,240, 0.95)',
margin = dict(b = 195))
fig["layout"]["xaxis2"].update(dict(title = "false positive rate"))
fig["layout"]["yaxis2"].update(dict(title = "true positive rate"))
fig["layout"]["xaxis3"].update(dict(showgrid = True,tickfont = dict(size = 10),
tickangle = 90))
py.iplot(fig)
if threshold_plot == True :
visualizer = DiscriminationThreshold(algorithm)
visualizer.fit(training_x,training_y)
visualizer.poof()
logit = LogisticRegression(C=1.0, class_weight=None, dual=False, fit_intercept=True,
intercept_scaling=1, max_iter=100, multi_class='ovr', n_jobs=1,
penalty='l2', random_state=None, solver='liblinear', tol=0.0001,
verbose=0, warm_start=False)
coupon_use_prediction(logit,train_X,test_X,train_Y,test_Y,
cols,"coefficients",threshold_plot = True)
trace1 is the output of ff.create_annotated_heatmap
, which returns an object of type plotly.graph_objs._figure.Figure
. Here it is the line of code where it happens. You can't add a whole figure as a trace, only the data part of it, something like:
fig.add_trace(go.Heatmap(trace1.data[0]))
The annotations are stored in the layout so you will have to modify those out too somehow.
The technical post webpages of this site follow the CC BY-SA 4.0 protocol. If you need to reprint, please indicate the site URL or the original address.Any question please contact:yoyou2525@163.com.