I have pretty big file, containing lots of unnecessary things and need to filter it out. So the thing which is interesting me is sth like that:
iteration # 20 ecut= 36.00 Ry beta=0.10
Davidson diagonalization with overlap
ethr = 4.07E-13, avg # of iterations = 3.8
total cpu time spent up to now is 351441.3 secs
End of self-consistent calculation
Number of k-points >= 100: set verbosity='high' to print the bands.
highest occupied, lowest unoccupied level (ev): 2.2896 4.1062
Okay so I need to calucate: Bg=ELUMO−EHOMO, while ELUMO and EHOMO are the highest and lowest occupied values. The problem is that I want to have output like that:
Iteration #<number>
Bg=xxx
My 2 questions: 1. I can grep by 'highest' - string so I get every line like:
highest occupied, lowest unoccupied level (ev): 2.3005 4.0791
But how can I set variables to the highest and lowest unoccupied level?
2.Since not every iteration gives me the values of unoccupied levels (I want to skip it then), how should I grep/find to have always the Iteration number and unoccupied levels?
Using awk
awk '/^iteration|highest/{if ($0 ~ "iteration") gsub(/ecut.*/ , "", $0); if ($0 ~ "highest") $0=($(NF-1)-$NF); print}'
Demo:
$cat file.txt
iteration # 20 ecut= 36.00 Ry beta=0.10
Davidson diagonalization with overlap
ethr = 4.07E-13, avg # of iterations = 3.8
total cpu time spent up to now is 351441.3 secs
End of self-consistent calculation
Number of k-points >= 100: set verbosity='high' to print the bands.
highest occupied, lowest unoccupied level (ev): 2.2896 4.1062
$awk '/^iteration|highest/{if ($0~"iteration") gsub(/ecut.*/,"",$0); if ($0 ~ "highest") $0=($(NF-1)-$NF); print}' < file.txt
iteration # 20
-1.8166
$
Explanation :
/^iteration|highest/ -- Select only rows starting with iteration or with highesh
($0 ~ "iteration") -- $0 means entire row, Check if row have iteration pattern
gsub(/ecut.*/ , "", $0) -- Delete all char after **ecut**
NF -- > number of fields in row
$NF --> last field
$(NF-1) --> second last field
$0=($(NF-1)-$NF -- Set current row as second last field - last field
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