Mysql keeps on restarting and shutdown in docker

Question

my-admin-db.com_1       | 2020-09-08T06:05:23.367975Z 0 [Warning] TIMESTAMP with implicit DEFAULT value is deprecated. Please use --explicit_defaults_for_timestamp server option (see documentation for more details).
my-admin-db.com_1       | 2020-09-08T06:05:23.369624Z 0 [Note] mysqld (mysqld 5.7.31) starting as process 1 ...
my-admin-db.com_1       | 2020-09-08T06:05:23.372921Z 0 [Note] InnoDB: PUNCH HOLE support available
my-admin-db.com_1       | 2020-09-08T06:05:23.372942Z 0 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins
my-admin-db.com_1       | 2020-09-08T06:05:23.372947Z 0 [Note] InnoDB: Uses event mutexes
my-admin-db.com_1       | 2020-09-08T06:05:23.372952Z 0 [Note] InnoDB: GCC builtin __atomic_thread_fence() is used for memory barrier
my-admin-db.com_1       | 2020-09-08T06:05:23.372968Z 0 [Note] InnoDB: Compressed tables use zlib 1.2.11
my-admin-db.com_1       | 2020-09-08T06:05:23.372972Z 0 [Note] InnoDB: Using Linux native AIO
my-admin-db.com_1       | 2020-09-08T06:05:23.373291Z 0 [Note] InnoDB: Number of pools: 1
my-admin-db.com_1       | 2020-09-08T06:05:23.373432Z 0 [Note] InnoDB: Using CPU crc32 instructions
my-admin-db.com_1       | 2020-09-08T06:05:23.375506Z 0 [Note] InnoDB: Initializing buffer pool, total size = 128M, instances = 1, chunk size = 128M
my-admin-db.com_1       | 2020-09-08T06:05:23.388608Z 0 [Note] InnoDB: Completed initialization of buffer pool
my-admin-db.com_1       | 2020-09-08T06:05:23.391222Z 0 [Note] InnoDB: If the mysqld execution user is authorized, page cleaner thread priority can be changed. See the man page of setpriority().
my-admin-db.com_1       | 2020-09-08T06:05:23.403447Z 0 [Note] InnoDB: Highest supported file format is Barracuda.
my-admin-db.com_1       | 2020-09-08T06:05:23.474527Z 0 [Note] InnoDB: Creating shared tablespace for temporary tables
my-admin-db.com_1       | 2020-09-08T06:05:23.474621Z 0 [Note] InnoDB: Setting file './ibtmp1' size to 12 MB. Physically writing the file full; Please wait ...
my-admin-db.com_1       | 2020-09-08T06:05:23.680361Z 0 [Note] InnoDB: File './ibtmp1' size is now 12 MB.
my-admin-db.com_1       | 2020-09-08T06:05:23.682461Z 0 [Note] InnoDB: 96 redo rollback segment(s) found. 96 redo rollback segment(s) are active.
my-admin-db.com_1       | 2020-09-08T06:05:23.682498Z 0 [Note] InnoDB: 32 non-redo rollback segment(s) are active.
my-admin-db.com_1       | 2020-09-08T06:05:23.683937Z 0 [Note] InnoDB: 5.7.31 started; log sequence number 13805196
my-admin-db.com_1       | 2020-09-08T06:05:23.685254Z 0 [Note] InnoDB: Loading buffer pool(s) from /var/lib/mysql/ib_buffer_pool
my-admin-db.com_1       | 2020-09-08T06:05:23.685303Z 0 [Note] Plugin 'FEDERATED' is disabled.
my-admin-db.com_1       | 2020-09-08T06:05:23.690345Z 0 [Note] InnoDB: Buffer pool(s) load completed at 200908  2:05:23
my-admin-db.com_1       | 2020-09-08T06:05:23.696899Z 0 [Note] Found ca.pem, server-cert.pem and server-key.pem in data directory. Trying to enable SSL support using them.
my-admin-db.com_1       | 2020-09-08T06:05:23.696919Z 0 [Note] Skipping generation of SSL certificates as certificate files are present in data directory.
my-admin-db.com_1       | 2020-09-08T06:05:23.697738Z 0 [Warning] CA certificate ca.pem is self signed.
my-admin-db.com_1       | 2020-09-08T06:05:23.697786Z 0 [Note] Skipping generation of RSA key pair as key files are present in data directory.
my-admin-db.com_1       | 2020-09-08T06:05:23.698319Z 0 [Note] Server hostname (bind-address): '*'; port: 3306
my-admin-db.com_1       | 2020-09-08T06:05:23.698458Z 0 [Note] IPv6 is available.
my-admin-db.com_1       | 2020-09-08T06:05:23.698525Z 0 [Note]   - '::' resolves to '::';
my-admin-db.com_1       | 2020-09-08T06:05:23.698560Z 0 [Note] Server socket created on IP: '::'.
my-admin-db.com_1       | 2020-09-08T06:05:23.736220Z 0 [Warning] Insecure configuration for --pid-file: Location '/var/run/mysqld' in the path is accessible to all OS users. Consider choosing a different directory.
my-admin-db.com_1       | 2020-09-08T06:05:23.737779Z 0 [ERROR] Fatal error: Can't open and lock privilege tables: Table 'mysql.user' doesn't exist
my-admin-db.com_1       | 2020-09-08T06:05:23.737819Z 0 [ERROR] Fatal error: Failed to initialize ACL/grant/time zones structures or failed to remove temporary table files.
my-admin-db.com_1       | 2020-09-08T06:05:23.738067Z 0 [ERROR] Aborting
my-admin-db.com_1       | 
my-admin-db.com_1       | 2020-09-08T06:05:23.738146Z 0 [Note] Binlog end
my-admin-db.com_1       | 2020-09-08T06:05:23.738271Z 0 [Note] Shutting down plugin 'ngram'
my-admin-db.com_1       | 2020-09-08T06:05:23.738288Z 0 [Note] Shutting down plugin 'partition'
my-admin-db.com_1       | 2020-09-08T06:05:23.738298Z 0 [Note] Shutting down plugin 'BLACKHOLE'
my-admin-db.com_1       | 2020-09-08T06:05:23.738308Z 0 [Note] Shutting down plugin 'ARCHIVE'
my-admin-db.com_1       | 2020-09-08T06:05:23.738316Z 0 [Note] Shutting down plugin 'PERFORMANCE_SCHEMA'
my-admin-db.com_1       | 2020-09-08T06:05:23.738539Z 0 [Note] Shutting down plugin 'MRG_MYISAM'
my-admin-db.com_1       | 2020-09-08T06:05:23.738553Z 0 [Note] Shutting down plugin 'MyISAM'
my-admin-db.com_1       | 2020-09-08T06:05:23.738589Z 0 [Note] Shutting down plugin 'INNODB_SYS_VIRTUAL'
my-admin-db.com_1       | 2020-09-08T06:05:23.738711Z 0 [Note] Shutting down plugin 'INNODB_SYS_DATAFILES'
my-admin-db.com_1       | 2020-09-08T06:05:23.738934Z 0 [Note] Shutting down plugin 'INNODB_SYS_TABLESPACES'
my-admin-db.com_1       | 2020-09-08T06:05:23.738965Z 0 [Note] Shutting down plugin 'INNODB_SYS_FOREIGN_COLS'
my-admin-db.com_1       | 2020-09-08T06:05:23.738975Z 0 [Note] Shutting down plugin 'INNODB_SYS_FOREIGN'
my-admin-db.com_1       | 2020-09-08T06:05:23.738984Z 0 [Note] Shutting down plugin 'INNODB_SYS_FIELDS'
my-admin-db.com_1       | 2020-09-08T06:05:23.738992Z 0 [Note] Shutting down plugin 'INNODB_SYS_COLUMNS'
my-admin-db.com_1       | 2020-09-08T06:05:23.739000Z 0 [Note] Shutting down plugin 'INNODB_SYS_INDEXES'
my-admin-db.com_1       | 2020-09-08T06:05:23.739008Z 0 [Note] Shutting down plugin 'INNODB_SYS_TABLESTATS'
my-admin-db.com_1       | 2020-09-08T06:05:23.739017Z 0 [Note] Shutting down plugin 'INNODB_SYS_TABLES'
my-admin-db.com_1       | 2020-09-08T06:05:23.739025Z 0 [Note] Shutting down plugin 'INNODB_FT_INDEX_TABLE'
my-admin-db.com_1       | 2020-09-08T06:05:23.739033Z 0 [Note] Shutting down plugin 'INNODB_FT_INDEX_CACHE'
my-admin-db.com_1       | 2020-09-08T06:05:23.739042Z 0 [Note] Shutting down plugin 'INNODB_FT_CONFIG'
my-admin-db.com_1       | 2020-09-08T06:05:23.739052Z 0 [Note] Shutting down plugin 'INNODB_FT_BEING_DELETED'
my-admin-db.com_1       | 2020-09-08T06:05:23.739060Z 0 [Note] Shutting down plugin 'INNODB_FT_DELETED'
my-admin-db.com_1       | 2020-09-08T06:05:23.739069Z 0 [Note] Shutting down plugin 'INNODB_FT_DEFAULT_STOPWORD'
my-admin-db.com_1       | 2020-09-08T06:05:23.739078Z 0 [Note] Shutting down plugin 'INNODB_METRICS'
my-admin-db.com_1       | 2020-09-08T06:05:23.739087Z 0 [Note] Shutting down plugin 'INNODB_TEMP_TABLE_INFO'
my-admin-db.com_1       | 2020-09-08T06:05:23.739095Z 0 [Note] Shutting down plugin 'INNODB_BUFFER_POOL_STATS'
my-admin-db.com_1       | 2020-09-08T06:05:23.739104Z 0 [Note] Shutting down plugin 'INNODB_BUFFER_PAGE_LRU'
my-admin-db.com_1       | 2020-09-08T06:05:23.739113Z 0 [Note] Shutting down plugin 'INNODB_BUFFER_PAGE'
my-admin-db.com_1       | 2020-09-08T06:05:23.739121Z 0 [Note] Shutting down plugin 'INNODB_CMP_PER_INDEX_RESET'
my-admin-db.com_1       | 2020-09-08T06:05:23.739129Z 0 [Note] Shutting down plugin 'INNODB_CMP_PER_INDEX'
my-admin-db.com_1       | 2020-09-08T06:05:23.739137Z 0 [Note] Shutting down plugin 'INNODB_CMPMEM_RESET'
my-admin-db.com_1       | 2020-09-08T06:05:23.739146Z 0 [Note] Shutting down plugin 'INNODB_CMPMEM'
my-admin-db.com_1       | 2020-09-08T06:05:23.739154Z 0 [Note] Shutting down plugin 'INNODB_CMP_RESET'
my-admin-db.com_1       | 2020-09-08T06:05:23.739162Z 0 [Note] Shutting down plugin 'INNODB_CMP'
my-admin-db.com_1       | 2020-09-08T06:05:23.739171Z 0 [Note] Shutting down plugin 'INNODB_LOCK_WAITS'
my-admin-db.com_1       | 2020-09-08T06:05:23.739180Z 0 [Note] Shutting down plugin 'INNODB_LOCKS'
my-admin-db.com_1       | 2020-09-08T06:05:23.739189Z 0 [Note] Shutting down plugin 'INNODB_TRX'
my-admin-db.com_1       | 2020-09-08T06:05:23.739197Z 0 [Note] Shutting down plugin 'InnoDB'
my-admin-db.com_1       | 2020-09-08T06:05:23.739377Z 0 [Note] InnoDB: FTS optimize thread exiting.
my-admin-db.com_1       | 2020-09-08T06:05:23.739810Z 0 [Note] InnoDB: Starting shutdown...
my-admin-db.com_1       | 2020-09-08T06:05:23.840672Z 0 [Note] InnoDB: Dumping buffer pool(s) to /var/lib/mysql/ib_buffer_pool
my-admin-db.com_1       | 2020-09-08T06:05:23.841296Z 0 [Note] InnoDB: Buffer pool(s) dump completed at 200908  2:05:23
my-admin-db.com_1       | 2020-09-08T06:05:25.509915Z 0 [Note] InnoDB: Shutdown completed; log sequence number 13805215
my-admin-db.com_1       | 2020-09-08T06:05:25.511721Z 0 [Note] InnoDB: Removed temporary tablespace data file: "ibtmp1"
my-admin-db.com_1       | 2020-09-08T06:05:25.511744Z 0 [Note] Shutting down plugin 'MEMORY'
my-admin-db.com_1       | 2020-09-08T06:05:25.511751Z 0 [Note] Shutting down plugin 'CSV'
my-admin-db.com_1       | 2020-09-08T06:05:25.511757Z 0 [Note] Shutting down plugin 'sha256_password'
my-admin-db.com_1       | 2020-09-08T06:05:25.511761Z 0 [Note] Shutting down plugin 'mysql_native_password'
my-admin-db.com_1       | 2020-09-08T06:05:25.511935Z 0 [Note] Shutting down plugin 'binlog'
my-admin-db.com_1       | 2020-09-08T06:05:25.512173Z 0 [Note] mysqld: Shutdown complete

This is my docker compose yml file.

version: '2'
services:
  my-admin-db.com:
    image: mysql:5.7
    volumes_from:
      - my-admin-db-data.com
    ports:
      - "3307:3306"
    environment:
      TZ: "US/Eastern"
      JAVA_OPTS: -Xms128m
      MYSQL_ROOT_PASSWORD: root
      MYSQL_DATABASE: root
    restart: always 
    mem_limit: 512m
  my-admin-db-data.com:
    image: busybox
    volumes:
      - ~/docker/mysql/my_admin:/var/lib/mysql

  my-db.com:
    image: mysql:5.7
    volumes_from:
      - my-db-data.com
    environment:
      TZ: "US/Eastern"
      JAVA_OPTS: -Xms128m
      MYSQL_ROOT_PASSWORD: root
      MYSQL_DATABASE: root
    ports:
      - "3352:3306"
    restart: always
    mem_limit: 512m
  my-db-data.com:
    image: busybox
    volumes:
      - ~/docker/mysql/my_db:/var/lib/mysql

I have two mysql instance in my docker yml. One is working fine while another is creating error. I have also tried to change the mysql port and removing the existing container but still it is giving me same error.

It looks like the error coming from here

Fatal error: Can't open and lock privilege tables: Table 'mysql.user' doesn't exist
my-admin-db.com_1       | 2020-09-08T06:05:23.737819Z 0 [ERROR] Fatal error: Failed to initialize ACL/grant/time zones structures or failed to remove temporary table files.

But I am not able to figure it out. Any help would be appreciated

Answer 1

在 .yml 文件中添加以下语句将起作用

command: "--skip-grant-tables"

Answer 2

This might be a permission thing.

~/docker/mysql/my_admin
~/docker/mysql/my_db

• Did you check folders for permissions?
• Did they created by docker-compose itself, or by hand?
• Did you try from scratch, without any data or folder?