I am trying to fit a list of dataframes and I can't figure out why I can't define conc and t0 outside of the function.
If I do it like this I get error:
'Error in nls.multstart::nls_multstart(y ~ fit_drx_mono(assoc_time, t0, : There must be as many parameter starting bounds as there are parameters'
conc <- 5e-9
t0 <- 127
nls.multstart::nls_multstart(y ~ fit_mono(assoc_time, t0, conc, kon, koff, ampon, ampoff),
data = data_to_fit,
iter = 100,
start_lower = c(kon = 1e4, koff = 0.00001, ampon = 0.05, ampoff = 0),
start_upper = c(kon = 1e7, koff = 0.5, ampon = 0.6, ampoff = 0.5),
lower = c(kon = 0, koff = 0, ampon = 0, ampoff = 0))
When I specify the values in the function everything works as it is supposed to. And I don't understand why.
It turned out I cannot define data = data_to_fit
otherwise the function looks for variables only in that dataframe. Once I defined every variable outside of the function without specifying data
it works.
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