In Eclipse's Package Explorer View, objects can have an adornment which consists of an orange rectangle (or cylinder), like so:
I can't find it in the icon reference for Eclipse Indigo.
What does it mean?
It means the file is under version control. (ie cvs, svn, git or something else)
You can have a look for the meaning here : http://www.rorycullen.com/blog/2009/07/guide-to-subclipse-decorator-icons/
maybe not your version control system, but it's pretty standard in eclipse.
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