将Spark DataFrame写入Parquet时出现Py4JError

Question

Trying to write a PySpark DataFrame df to the Parquet format, I get the following lengthy error. I'm quite sure the code is correct since the error does not appear when running it on another system. Can anyone help diagnose?

   df.write.parquet(parquet_path, mode="overwrite")  

---

Py4JJavaError                             Traceback (most recent call last)
<ipython-input-52-c778d2347577> in <module>()
----> 1 df.write.parquet(parquet_path, mode="overwrite")

/spark/python/pyspark/sql/readwriter.py in parquet(self, path, mode, partitionBy, compression)
    802             self.partitionBy(partitionBy)
    803         self._set_opts(compression=compression)
--> 804         self._jwrite.parquet(path)
    805 
    806     @since(1.6)

/spark/python/lib/py4j-0.10.7-src.zip/py4j/java_gateway.py in __call__(self, *args)
   1255         answer = self.gateway_client.send_command(command)
   1256         return_value = get_return_value(
-> 1257             answer, self.gateway_client, self.target_id, self.name)
   1258 
   1259         for temp_arg in temp_args:

/spark/python/pyspark/sql/utils.py in deco(*a, **kw)
     61     def deco(*a, **kw):
     62         try:
---> 63             return f(*a, **kw)
     64         except py4j.protocol.Py4JJavaError as e:
     65             s = e.java_exception.toString()

/spark/python/lib/py4j-0.10.7-src.zip/py4j/protocol.py in get_return_value(answer, gateway_client, target_id, name)
    326                 raise Py4JJavaError(
    327                     "An error occurred while calling {0}{1}{2}.\n".
--> 328                     format(target_id, ".", name), value)
    329             else:
    330                 raise Py4JError(

Py4JJavaError: An error occurred while calling o235.parquet.
: org.apache.spark.SparkException: Job aborted.
    at org.apache.spark.sql.execution.datasources.FileFormatWriter$.write(FileFormatWriter.scala:224)
    at org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelationCommand.run(InsertIntoHadoopFsRelationCommand.scala:154)
    at org.apache.spark.sql.execution.command.DataWritingCommandExec.sideEffectResult$lzycompute(commands.scala:104)
    at org.apache.spark.sql.execution.command.DataWritingCommandExec.sideEffectResult(commands.scala:102)
    at org.apache.spark.sql.execution.command.DataWritingCommandExec.doExecute(commands.scala:122)
    at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:131)
    at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:127)
    at org.apache.spark.sql.execution.SparkPlan$$anonfun$executeQuery$1.apply(SparkPlan.scala:155)
    at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
    at org.apache.spark.sql.execution.SparkPlan.executeQuery(SparkPlan.scala:152)
    at org.apache.spark.sql.execution.SparkPlan.execute(SparkPlan.scala:127)
    at org.apache.spark.sql.execution.QueryExecution.toRdd$lzycompute(QueryExecution.scala:80)
    at org.apache.spark.sql.execution.QueryExecution.toRdd(QueryExecution.scala:80)
    at org.apache.spark.sql.DataFrameWriter$$anonfun$runCommand$1.apply(DataFrameWriter.scala:654)
    at org.apache.spark.sql.DataFrameWriter$$anonfun$runCommand$1.apply(DataFrameWriter.scala:654)
    at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:77)
    at org.apache.spark.sql.DataFrameWriter.runCommand(DataFrameWriter.scala:654)
    at org.apache.spark.sql.DataFrameWriter.saveToV1Source(DataFrameWriter.scala:273)
    at org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:267)
    at org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:225)
    at org.apache.spark.sql.DataFrameWriter.parquet(DataFrameWriter.scala:547)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244)
    at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357)
    at py4j.Gateway.invoke(Gateway.java:282)
    at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132)
    at py4j.commands.CallCommand.execute(CallCommand.java:79)
    at py4j.GatewayConnection.run(GatewayConnection.java:238)
    at java.lang.Thread.run(Thread.java:748)
Caused by: org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 44.0 failed 1 times, most recent failure: Lost task 0.0 in stage 44.0 (TID 160, localhost, executor driver): org.apache.spark.SparkException: Task failed while writing rows.
    at org.apache.spark.sql.execution.datasources.FileFormatWriter$.org$apache$spark$sql$execution$datasources$FileFormatWriter$$executeTask(FileFormatWriter.scala:285)
    at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$write$1.apply(FileFormatWriter.scala:197)
    at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$write$1.apply(FileFormatWriter.scala:196)
    at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
    at org.apache.spark.scheduler.Task.run(Task.scala:109)
    at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:345)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
    at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.UnsatisfiedLinkError: /tmp/snappy-1.1.2-bc5c9dab-74ad-4c74-a011-0bb7d6fe9a4e-libsnappyjava.so: Error loading shared library ld-linux-x86-64.so.2: No such file or directory (needed by /tmp/snappy-1.1.2-bc5c9dab-74ad-4c74-a011-0bb7d6fe9a4e-libsnappyjava.so)
    at java.lang.ClassLoader$NativeLibrary.load(Native Method)
    at java.lang.ClassLoader.loadLibrary0(ClassLoader.java:1941)
    at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1824)
    at java.lang.Runtime.load0(Runtime.java:809)
    at java.lang.System.load(System.java:1086)
    at org.xerial.snappy.SnappyLoader.loadNativeLibrary(SnappyLoader.java:174)
    at org.xerial.snappy.SnappyLoader.load(SnappyLoader.java:152)
    at org.xerial.snappy.Snappy.<clinit>(Snappy.java:47)
    at org.apache.parquet.hadoop.codec.SnappyCompressor.compress(SnappyCompressor.java:67)
    at org.apache.hadoop.io.compress.CompressorStream.compress(CompressorStream.java:81)
    at org.apache.hadoop.io.compress.CompressorStream.finish(CompressorStream.java:92)
    at org.apache.parquet.hadoop.CodecFactory$BytesCompressor.compress(CodecFactory.java:112)
    at org.apache.parquet.hadoop.ColumnChunkPageWriteStore$ColumnChunkPageWriter.writePage(ColumnChunkPageWriteStore.java:93)
    at org.apache.parquet.column.impl.ColumnWriterV1.writePage(ColumnWriterV1.java:150)
    at org.apache.parquet.column.impl.ColumnWriterV1.flush(ColumnWriterV1.java:238)
    at org.apache.parquet.column.impl.ColumnWriteStoreV1.flush(ColumnWriteStoreV1.java:121)
    at org.apache.parquet.hadoop.InternalParquetRecordWriter.flushRowGroupToStore(InternalParquetRecordWriter.java:167)
    at org.apache.parquet.hadoop.InternalParquetRecordWriter.close(InternalParquetRecordWriter.java:109)
    at org.apache.parquet.hadoop.ParquetRecordWriter.close(ParquetRecordWriter.java:163)
    at org.apache.spark.sql.execution.datasources.parquet.ParquetOutputWriter.close(ParquetOutputWriter.scala:42)
    at org.apache.spark.sql.execution.datasources.FileFormatWriter$SingleDirectoryWriteTask.releaseResources(FileFormatWriter.scala:405)
    at org.apache.spark.sql.execution.datasources.FileFormatWriter$SingleDirectoryWriteTask.execute(FileFormatWriter.scala:396)
    at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$org$apache$spark$sql$execution$datasources$FileFormatWriter$$executeTask$3.apply(FileFormatWriter.scala:269)
    at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$org$apache$spark$sql$execution$datasources$FileFormatWriter$$executeTask$3.apply(FileFormatWriter.scala:267)
    at org.apache.spark.util.Utils$.tryWithSafeFinallyAndFailureCallbacks(Utils.scala:1414)
    at org.apache.spark.sql.execution.datasources.FileFormatWriter$.org$apache$spark$sql$execution$datasources$FileFormatWriter$$executeTask(FileFormatWriter.scala:272)
    ... 8 more

Driver stacktrace:
    at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1602)
    at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1590)
    at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1589)
    at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
    at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
    at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1589)
    at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:831)
    at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:831)
    at scala.Option.foreach(Option.scala:257)
    at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:831)
    at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1823)
    at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1772)
    at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1761)
    at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
    at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:642)
    at org.apache.spark.SparkContext.runJob(SparkContext.scala:2034)
    at org.apache.spark.sql.execution.datasources.FileFormatWriter$.write(FileFormatWriter.scala:194)
    ... 31 more
Caused by: org.apache.spark.SparkException: Task failed while writing rows.
    at org.apache.spark.sql.execution.datasources.FileFormatWriter$.org$apache$spark$sql$execution$datasources$FileFormatWriter$$executeTask(FileFormatWriter.scala:285)
    at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$write$1.apply(FileFormatWriter.scala:197)
    at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$write$1.apply(FileFormatWriter.scala:196)
    at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
    at org.apache.spark.scheduler.Task.run(Task.scala:109)
    at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:345)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
    ... 1 more
Caused by: java.lang.UnsatisfiedLinkError: /tmp/snappy-1.1.2-bc5c9dab-74ad-4c74-a011-0bb7d6fe9a4e-libsnappyjava.so: Error loading shared library ld-linux-x86-64.so.2: No such file or directory (needed by /tmp/snappy-1.1.2-bc5c9dab-74ad-4c74-a011-0bb7d6fe9a4e-libsnappyjava.so)
    at java.lang.ClassLoader$NativeLibrary.load(Native Method)
    at java.lang.ClassLoader.loadLibrary0(ClassLoader.java:1941)
    at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1824)
    at java.lang.Runtime.load0(Runtime.java:809)
    at java.lang.System.load(System.java:1086)
    at org.xerial.snappy.SnappyLoader.loadNativeLibrary(SnappyLoader.java:174)
    at org.xerial.snappy.SnappyLoader.load(SnappyLoader.java:152)
    at org.xerial.snappy.Snappy.<clinit>(Snappy.java:47)
    at org.apache.parquet.hadoop.codec.SnappyCompressor.compress(SnappyCompressor.java:67)
    at org.apache.hadoop.io.compress.CompressorStream.compress(CompressorStream.java:81)
    at org.apache.hadoop.io.compress.CompressorStream.finish(CompressorStream.java:92)
    at org.apache.parquet.hadoop.CodecFactory$BytesCompressor.compress(CodecFactory.java:112)
    at org.apache.parquet.hadoop.ColumnChunkPageWriteStore$ColumnChunkPageWriter.writePage(ColumnChunkPageWriteStore.java:93)
    at org.apache.parquet.column.impl.ColumnWriterV1.writePage(ColumnWriterV1.java:150)
    at org.apache.parquet.column.impl.ColumnWriterV1.flush(ColumnWriterV1.java:238)
    at org.apache.parquet.column.impl.ColumnWriteStoreV1.flush(ColumnWriteStoreV1.java:121)
    at org.apache.parquet.hadoop.InternalParquetRecordWriter.flushRowGroupToStore(InternalParquetRecordWriter.java:167)
    at org.apache.parquet.hadoop.InternalParquetRecordWriter.close(InternalParquetRecordWriter.java:109)
    at org.apache.parquet.hadoop.ParquetRecordWriter.close(ParquetRecordWriter.java:163)
    at org.apache.spark.sql.execution.datasources.parquet.ParquetOutputWriter.close(ParquetOutputWriter.scala:42)
    at org.apache.spark.sql.execution.datasources.FileFormatWriter$SingleDirectoryWriteTask.releaseResources(FileFormatWriter.scala:405)
    at org.apache.spark.sql.execution.datasources.FileFormatWriter$SingleDirectoryWriteTask.execute(FileFormatWriter.scala:396)
    at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$org$apache$spark$sql$execution$datasources$FileFormatWriter$$executeTask$3.apply(FileFormatWriter.scala:269)
    at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$org$apache$spark$sql$execution$datasources$FileFormatWriter$$executeTask$3.apply(FileFormatWriter.scala:267)
    at org.apache.spark.util.Utils$.tryWithSafeFinallyAndFailureCallbacks(Utils.scala:1414)
    at org.apache.spark.sql.execution.datasources.FileFormatWriter$.org$apache$spark$sql$execution$datasources$FileFormatWriter$$executeTask(FileFormatWriter.scala:272)
    ... 8 more

Answer 1

Looks like the lib that compress files to snappy.parquet format is missing.

Caused by: java.lang.UnsatisfiedLinkError: /tmp/snappy-1.1.2-bc5c9dab-74ad-4c74-a011-0bb7d6fe9a4e-libsnappyjava.so

You can try a different compress codec, like gzip, lzo or lz4.

Eg:

spark.conf.set("spark.sql.parquet.compression.codec", "gzip")