I have written an API that queries a MySQL database and outputs the corresponding results visiting an url. This is the code:
//server.js
var express = require('express'),
mysql = require('mysql'),
app = express(),
connectionpool = mysql.createPool({
host : 'localhost',
user : 'root',
password : 'password',
database : 'database'
});
app.get('/:transcript', function(req,res){
var var1 = req.param('transcript');
exports.var1 = var1;
var queries = require('./queries'),
query1 = queries.query1;
//Connection to MySQL
connectionpool.getConnection(function(err, connection) {
if (err) {res.send({result: 'error connection'})}
connection.query(query1, function(err, rows) {
if (err) {res.send({result: 'error query1'})};
counter = 0; root = {};
rows.forEach(function (row) {
build_actor(row.Transcript_alias, function(exprobject1) {
counter += 1;
//Defining and filling objects
main = {};
main.Official_transcript_name = row.Transcript_name;
main.Expression = exprobject1;
root[row.Transcript_alias] = main;
if (counter == rows.length) {
res.write(JSON.stringify(root, null, '\t'));
res.end();
}
});
});
connection.release();
});
//CallBack
function build_actor(transcript, callback) {
//Other, secondary queries:
var query2 = 'SELECT * FROM expression WHERE transcript_alias = "' + transcript + '";',
connection.query(query2, function(err, rows1) {
if (err) {res.send({result: 'error query2'})}
var exprobject2 = {},
exprobject1 = {};
for (i = 0; i < rows1.length; i++) {
Conditions = rows1[i].conditions;
Tissue = rows1[i].tissue;
FPKM = rows1[i].FPKM;
exprobject2[Tissue] = FPKM;
if (Conditions in exprobject1) {
exprobject1[Conditions].push(exprobject2);
} else {
exprobject1[Conditions] = [];
exprobject1[Conditions].push(exprobject2);
}
}
callback(exprobject1);
});
}
});
});
app.listen(3000);
console.log('Listening on port 3000');
This script calls a required file where there are my queries:
//queries.js
var server = require('./server'),
query1 = 'SELECT distinct(transcript_alias)\
FROM transcript_features \
WHERE f.transcript_alias = "' + var1 + '";';
exports.query1 = query1;
I go to the contents of this script this way:
http://localhost:3000/AC149829.2_FGT004
http://localhost:3000/AC148152.3_FGT007
When I first visit http://localhost:3000/AC149829.2_FGT004
, the API shows the correct results for the variable AC149829.2_FGT004
. However, when changing the variable to AC148152.3_FGT007
, it continues showing the information for the variable AC149829.2_FGT004
. In order to see the results for AC148152.3_FGT007
, I must kill the script, call it again, and visit for the first time http://localhost:3000/AC148152.3_FGT007
. In conclusion, results are not refreshed.
How is that? I tried with a simple:
app.get('/:transcript', function(req,res){
var input = req.param('transcript');
res.send(input);
});
but it works well...
EDIT . I found the source of my problem. query1
is always the same. The script only calls once:
exports.var1 = var1;
var queries = require('./queries'),
query1 = queries.query1;
There's a way to overcome this limitation?
I found the solution for my problem. As
//server.js
exports.var1 = var1;
var queries = require('./queries'),
query1 = queries.query1;
is executed once and remains in the cache, I changed my code without exporting var1
:
//server.js
var queries = require('./queries'),
query1 = queries.query1 + var1;
and
//queries.js
var server = require('./server'),
query1 = 'SELECT distinct(transcript_alias)\
FROM transcript_features \
WHERE f.transcript_alias = ';
exports.query1 = query1;
In other words, I import my query to server.js
without any variable. The variable is assigned at server.js
.
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