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Create Azure VM with ssh key through API

So I spent the better part of a day trying to navigate through the Azure API docs and finally I'm at a stage where I've got my VM up.

For the last couple of hours I've been trying to create a VM with a public key so I can ssh into it. However, it doesn't seem to be able to authenticate me.

Here's my code:

This adds the certificate to the service:

cert_path = "/home/rohan/temp/mycert.pem"

with open(cert_path, "rb") as bfile:
    cert_data = base64.b64encode(bfile.read()).decode() # decode to make sure this is a str and not a bstr
    cert_format = 'pfx'
    cert_password = ''
    cert_res = sms.add_service_certificate(service_name=hosted_service_name,
                        data=cert_data,
                        certificate_format=cert_format,
                        password=cert_password)

This is to create the VM with the ssh_key:

linux_config = LinuxConfigurationSet(vm_name, 'xxxx', 'yyyyy', True)

SERVICE_CERT_THUMBPRINT = "1058XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX"
linux_config.ssh = SSH()
pair = KeyPair(SERVICE_CERT_THUMBPRINT, '/home/xxxx/temp/mycert.pub')
linux_config.ssh.key_pairs.key_pairs.append(pair)

sms.create_virtual_machine_deployment(service_name=hosted_service_name,
    deployment_name=hosted_service_name,
    deployment_slot='production',
    label=hosted_service_name,
    role_name=hosted_service_name,
    system_config=linux_config,
    os_virtual_hard_disk=os_hd,
    role_size='Small')

When I try to ssh into the machine, I get the following log:

ssh -i mycert.key -v rohan@dw9y1qzwp2.cloudapp.net
OpenSSH_6.6.1, OpenSSL 1.0.1f 6 Jan 2014
debug1: Reading configuration data /etc/ssh/ssh_config
debug1: /etc/ssh/ssh_config line 19: Applying options for *
debug1: Connecting to dw9y1qzwp2.cloudapp.net [104.208.26.98] port 22.
debug1: Connection established.
debug1: identity file mycert.key type -1
debug1: identity file mycert.key-cert type -1
debug1: Enabling compatibility mode for protocol 2.0
debug1: Local version string SSH-2.0-OpenSSH_6.6.1p1 Ubuntu-2ubuntu2.3
debug1: Remote protocol version 2.0, remote software version OpenSSH_6.6p1 Ubuntu-2
debug1: match: OpenSSH_6.6p1 Ubuntu-2 pat OpenSSH_6.5*,OpenSSH_6.6* compat 0x14000000
debug1: SSH2_MSG_KEXINIT sent
debug1: SSH2_MSG_KEXINIT received
debug1: kex: server->client aes128-ctr hmac-md5-etm@openssh.com none
debug1: kex: client->server aes128-ctr hmac-md5-etm@openssh.com none
debug1: sending SSH2_MSG_KEX_ECDH_INIT
debug1: expecting SSH2_MSG_KEX_ECDH_REPLY
debug1: Server host key: ECDSA a2:80:7e:dc:b6:47:c5:d7:97:0a:7b:9c:75:c6:1f:85
debug1: Host 'dw9y1qzwp2.cloudapp.net' is known and matches the ECDSA host key.
debug1: Found key in /home/rohan/.ssh/known_hosts:22
debug1: ssh_ecdsa_verify: signature correct
debug1: SSH2_MSG_NEWKEYS sent
debug1: expecting SSH2_MSG_NEWKEYS
debug1: SSH2_MSG_NEWKEYS received
debug1: Roaming not allowed by server
debug1: SSH2_MSG_SERVICE_REQUEST sent
debug1: SSH2_MSG_SERVICE_ACCEPT received
debug1: Authentications that can continue: publickey
debug1: Next authentication method: publickey
debug1: Offering RSA public key: xxxx@gmail.com
debug1: Authentications that can continue: publickey
debug1: Trying private key: mycert.key
debug1: key_parse_private2: missing begin marker
debug1: read PEM private key done: type RSA
debug1: Authentications that can continue: publickey
debug1: No more authentication methods to try.
Permission denied (publickey).

I'm absolutely stumped and would love Any ideas or suggestions.

Probably not exactly what you were looking for, but in terms of "getting a VM up and running and connecting via ssh", it should do the trick (using the Azure CLI: https://azure.microsoft.com/en-us/documentation/articles/xplat-cli-install/ ):

azure vm quick-create -g nsglinuxrg -n nsglinuxvm -l westus --os-type Linux -Q Canonical:UbuntuServer:14.04.4-LTS:latest -z Standard_D1 -u negat -p <YOUR_PWORD> -M ~/.ssh/id_rsa.pub

After doing this, I can successfully connect using:

ssh negat@<PUBLIC_IP> -i ~/.ssh/id_rsa

where I discovered the PUBLIC_IP from the FQDN spat out by the first command.

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