Unable to install 'fancyimpute' in Anaconda
Question
I'm trying to install fancyimpute in Anaconda through Anaconda Powershell Prompt but it is resulting in an error. I tried many solutions but none worked for me.
I used the following commands to install fancyimpute :
conda install ecos
conda install CVXcanon
pip install fancyimpute
The error which I'm getting during pip install fancyimpute is as follows:
Requirement already satisfied: setuptools in c:\programdata\anaconda3\lib\site-packages (from protobuf>=3.6.1->tensorflow->fancyimpute) (41.0.1)
Building wheels for collected packages: fancyimpute, knnimpute, np-utils, scs, gast, termcolor, absl-py, dill
Building wheel for fancyimpute (setup.py) ... done
Stored in directory: C:\Users\Mandeep\AppData\Local\pip\Cache\wheels\32\c9\50\1332a2e8fc9dfa2cbc109f5232c5114155184ab676fdad75a0
Building wheel for knnimpute (setup.py) ... done
Stored in directory: C:\Users\Mandeep\AppData\Local\pip\Cache\wheels\a3\92\31\c3f8864714e9938396c3a68d8c542531f7e2d7862bb750b2e3
Building wheel for np-utils (setup.py) ... done
Stored in directory: C:\Users\Mandeep\AppData\Local\pip\Cache\wheels\e7\66\d8\fda30ac7283132e9924da37745e2864723f87926efff1027ee
Building wheel for scs (setup.py) ... error
ERROR: Complete output from command 'C:\ProgramData\Anaconda3\python.exe' -u -c 'import setuptools, tokenize;__file__='"'"'C:\\Users\\Mandeep\\AppData\\Local\\Temp\\pip-install-assnbjrs\\scs\\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d 'C:\Users\Mandeep\AppData\Local\Temp\pip-wheel-edkex6p8' --python-tag cp36:
ERROR: Namespace(blas64=False, extraverbose=False, float32=False, gpu=False, int32=False, scs=False)
running bdist_wheel
running build
running build_py
creating build
creating build\lib.win-amd64-3.6
creating build\lib.win-amd64-3.6\scs
copying src\__init__.py -> build\lib.win-amd64-3.6\scs
running build_ext
mkl_info:
libraries = ['mkl_rt']
library_dirs = ['C:/ProgramData/Anaconda3\\Library\\lib']
define_macros = [('SCIPY_MKL_H', None), ('HAVE_CBLAS', None)]
include_dirs = ['C:\\Program Files (x86)\\IntelSWTools\\compilers_and_libraries_2019.0.117\\windows\\mkl', 'C:\\Program Files (x86)\\IntelSWTools\\compilers_and_libraries_2019.0.117\\windows\\mkl\\include', 'C:\\Program Files (x86)\\IntelSWTools\\compilers_and_libraries_2019.0.117\\windows\\mkl\\lib', 'C:/ProgramData/Anaconda3\\Library\\include']
blas_mkl_info:
libraries = ['mkl_rt']
library_dirs = ['C:/ProgramData/Anaconda3\\Library\\lib']
define_macros = [('SCIPY_MKL_H', None), ('HAVE_CBLAS', None)]
include_dirs = ['C:\\Program Files (x86)\\IntelSWTools\\compilers_and_libraries_2019.0.117\\windows\\mkl', 'C:\\Program Files (x86)\\IntelSWTools\\compilers_and_libraries_2019.0.117\\windows\\mkl\\include', 'C:\\Program Files (x86)\\IntelSWTools\\compilers_and_libraries_2019.0.117\\windows\\mkl\\lib', 'C:/ProgramData/Anaconda3\\Library\\include']
blas_opt_info:
libraries = ['mkl_rt']
library_dirs = ['C:/ProgramData/Anaconda3\\Library\\lib']
define_macros = [('SCIPY_MKL_H', None), ('HAVE_CBLAS', None)]
include_dirs = ['C:\\Program Files (x86)\\IntelSWTools\\compilers_and_libraries_2019.0.117\\windows\\mkl', 'C:\\Program Files (x86)\\IntelSWTools\\compilers_and_libraries_2019.0.117\\windows\\mkl\\include', 'C:\\Program Files (x86)\\IntelSWTools\\compilers_and_libraries_2019.0.117\\windows\\mkl\\lib', 'C:/ProgramData/Anaconda3\\Library\\include']
lapack_mkl_info:
libraries = ['mkl_rt']
library_dirs = ['C:/ProgramData/Anaconda3\\Library\\lib']
define_macros = [('SCIPY_MKL_H', None), ('HAVE_CBLAS', None)]
include_dirs = ['C:\\Program Files (x86)\\IntelSWTools\\compilers_and_libraries_2019.0.117\\windows\\mkl', 'C:\\Program Files (x86)\\IntelSWTools\\compilers_and_libraries_2019.0.117\\windows\\mkl\\include', 'C:\\Program Files (x86)\\IntelSWTools\\compilers_and_libraries_2019.0.117\\windows\\mkl\\lib', 'C:/ProgramData/Anaconda3\\Library\\include']
lapack_opt_info:
libraries = ['mkl_rt']
library_dirs = ['C:/ProgramData/Anaconda3\\Library\\lib']
define_macros = [('SCIPY_MKL_H', None), ('HAVE_CBLAS', None)]
include_dirs = ['C:\\Program Files (x86)\\IntelSWTools\\compilers_and_libraries_2019.0.117\\windows\\mkl', 'C:\\Program Files (x86)\\IntelSWTools\\compilers_and_libraries_2019.0.117\\windows\\mkl\\include', 'C:\\Program Files (x86)\\IntelSWTools\\compilers_and_libraries_2019.0.117\\windows\\mkl\\lib', 'C:/ProgramData/Anaconda3\\Library\\include']
Could not locate executable g77
Could not locate executable f77
Could not locate executable ifort
Could not locate executable ifl
Could not locate executable f90
Could not locate executable DF
Could not locate executable efl
Could not locate executable gfortran
Could not locate executable f95
Could not locate executable g95
Could not locate executable efort
Could not locate executable efc
Could not locate executable flang
don't know how to compile Fortran code on platform 'nt'
C:\ProgramData\Anaconda3\lib\site-packages\numpy\distutils\system_info.py:639: UserWarning:
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
the ATLAS environment variable.
self.calc_info()
C:\ProgramData\Anaconda3\lib\site-packages\numpy\distutils\system_info.py:639: UserWarning:
Blas (http://www.netlib.org/blas/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [blas]) or by setting
the BLAS environment variable.
self.calc_info()
C:\ProgramData\Anaconda3\lib\site-packages\numpy\distutils\system_info.py:639: UserWarning:
Blas (http://www.netlib.org/blas/) sources not found.
Directories to search for the sources can be specified in the
numpy/distutils/site.cfg file (section [blas_src]) or by setting
the BLAS_SRC environment variable.
self.calc_info()
{}
C:\ProgramData\Anaconda3\lib\site-packages\numpy\distutils\system_info.py:639: UserWarning:
Lapack (http://www.netlib.org/lapack/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [lapack]) or by setting
the LAPACK environment variable.
self.calc_info()
C:\ProgramData\Anaconda3\lib\site-packages\numpy\distutils\system_info.py:639: UserWarning:
Lapack (http://www.netlib.org/lapack/) sources not found.
Directories to search for the sources can be specified in the
numpy/distutils/site.cfg file (section [lapack_src]) or by setting
the LAPACK_SRC environment variable.
self.calc_info()
{}
Exception in thread Thread-1:
Traceback (most recent call last):
File "C:\ProgramData\Anaconda3\lib\threading.py", line 916, in _bootstrap_inner
self.run()
File "C:\ProgramData\Anaconda3\lib\threading.py", line 864, in run
self._target(*self._args, **self._kwargs)
File "C:\ProgramData\Anaconda3\lib\distutils\_msvccompiler.py", line 69, in _getall
all_packages.extend(_distutils_findvs.findall())
OSError: Error 80070002
error: Microsoft Visual C++ 14.0 is required. Get it with "Microsoft Visual C++ Build Tools": https://visualstudio.microsoft.com/downloads/
----------------------------------------
ERROR: Failed building wheel for scs
Running setup.py clean for scs
Building wheel for gast (setup.py) ... done
Stored in directory: C:\Users\Mandeep\AppData\Local\pip\Cache\wheels\5c\2e\7e\a1d4d4fcebe6c381f378ce7743a3ced3699feb89bcfbdadadd
Building wheel for termcolor (setup.py) ... done
Stored in directory: C:\Users\Mandeep\AppData\Local\pip\Cache\wheels\7c\06\54\bc84598ba1daf8f970247f550b175aaaee85f68b4b0c5ab2c6
Building wheel for absl-py (setup.py) ... done
Stored in directory: C:\Users\Mandeep\AppData\Local\pip\Cache\wheels\ee\98\38\46cbcc5a93cfea5492d19c38562691ddb23b940176c14f7b48
Building wheel for dill (setup.py) ... done
Stored in directory: C:\Users\Mandeep\AppData\Local\pip\Cache\wheels\5b\d7\0f\e58eae695403de585269f4e4a94e0cd6ca60ec0c202936fa4a
Successfully built fancyimpute knnimpute np-utils gast termcolor absl-py dill
Failed to build scs
Installing collected packages: knnimpute, osqp, scs, dill, multiprocess, cvxpy, keras-applications, keras-preprocessing, keras, np-utils, astor, markdown, absl-py, grpcio, protobuf, tensorboard, mock, tensorflow-estimator, gast, termcolor, tensorflow, fancyimpute
Running setup.py install for scs ... error
ERROR: Complete output from command 'C:\ProgramData\Anaconda3\python.exe' -u -c 'import setuptools, tokenize;__file__='"'"'C:\\Users\\Mandeep\\AppData\\Local\\Temp\\pip-install-assnbjrs\\scs\\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record 'C:\Users\Mandeep\AppData\Local\Temp\pip-record-qtt9_e2k\install-record.txt' --single-version-externally-managed --compile:
ERROR: Namespace(blas64=False, extraverbose=False, float32=False, gpu=False, int32=False, scs=False)
running install
running build
running build_py
creating build
creating build\lib.win-amd64-3.6
creating build\lib.win-amd64-3.6\scs
copying src\__init__.py -> build\lib.win-amd64-3.6\scs
running build_ext
mkl_info:
libraries = ['mkl_rt']
library_dirs = ['C:/ProgramData/Anaconda3\\Library\\lib']
define_macros = [('SCIPY_MKL_H', None), ('HAVE_CBLAS', None)]
include_dirs = ['C:\\Program Files (x86)\\IntelSWTools\\compilers_and_libraries_2019.0.117\\windows\\mkl', 'C:\\Program Files (x86)\\IntelSWTools\\compilers_and_libraries_2019.0.117\\windows\\mkl\\include', 'C:\\Program Files (x86)\\IntelSWTools\\compilers_and_libraries_2019.0.117\\windows\\mkl\\lib', 'C:/ProgramData/Anaconda3\\Library\\include']
blas_mkl_info:
libraries = ['mkl_rt']
library_dirs = ['C:/ProgramData/Anaconda3\\Library\\lib']
define_macros = [('SCIPY_MKL_H', None), ('HAVE_CBLAS', None)]
include_dirs = ['C:\\Program Files (x86)\\IntelSWTools\\compilers_and_libraries_2019.0.117\\windows\\mkl', 'C:\\Program Files (x86)\\IntelSWTools\\compilers_and_libraries_2019.0.117\\windows\\mkl\\include', 'C:\\Program Files (x86)\\IntelSWTools\\compilers_and_libraries_2019.0.117\\windows\\mkl\\lib', 'C:/ProgramData/Anaconda3\\Library\\include']
blas_opt_info:
libraries = ['mkl_rt']
library_dirs = ['C:/ProgramData/Anaconda3\\Library\\lib']
define_macros = [('SCIPY_MKL_H', None), ('HAVE_CBLAS', None)]
include_dirs = ['C:\\Program Files (x86)\\IntelSWTools\\compilers_and_libraries_2019.0.117\\windows\\mkl', 'C:\\Program Files (x86)\\IntelSWTools\\compilers_and_libraries_2019.0.117\\windows\\mkl\\include', 'C:\\Program Files (x86)\\IntelSWTools\\compilers_and_libraries_2019.0.117\\windows\\mkl\\lib', 'C:/ProgramData/Anaconda3\\Library\\include']
lapack_mkl_info:
libraries = ['mkl_rt']
library_dirs = ['C:/ProgramData/Anaconda3\\Library\\lib']
define_macros = [('SCIPY_MKL_H', None), ('HAVE_CBLAS', None)]
include_dirs = ['C:\\Program Files (x86)\\IntelSWTools\\compilers_and_libraries_2019.0.117\\windows\\mkl', 'C:\\Program Files (x86)\\IntelSWTools\\compilers_and_libraries_2019.0.117\\windows\\mkl\\include', 'C:\\Program Files (x86)\\IntelSWTools\\compilers_and_libraries_2019.0.117\\windows\\mkl\\lib', 'C:/ProgramData/Anaconda3\\Library\\include']
lapack_opt_info:
libraries = ['mkl_rt']
library_dirs = ['C:/ProgramData/Anaconda3\\Library\\lib']
define_macros = [('SCIPY_MKL_H', None), ('HAVE_CBLAS', None)]
include_dirs = ['C:\\Program Files (x86)\\IntelSWTools\\compilers_and_libraries_2019.0.117\\windows\\mkl', 'C:\\Program Files (x86)\\IntelSWTools\\compilers_and_libraries_2019.0.117\\windows\\mkl\\include', 'C:\\Program Files (x86)\\IntelSWTools\\compilers_and_libraries_2019.0.117\\windows\\mkl\\lib', 'C:/ProgramData/Anaconda3\\Library\\include']
Could not locate executable g77
Could not locate executable f77
Could not locate executable ifort
Could not locate executable ifl
Could not locate executable f90
Could not locate executable DF
Could not locate executable efl
Could not locate executable gfortran
Could not locate executable f95
Could not locate executable g95
Could not locate executable efort
Could not locate executable efc
Could not locate executable flang
don't know how to compile Fortran code on platform 'nt'
C:\ProgramData\Anaconda3\lib\site-packages\numpy\distutils\system_info.py:639: UserWarning:
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
the ATLAS environment variable.
self.calc_info()
C:\ProgramData\Anaconda3\lib\site-packages\numpy\distutils\system_info.py:639: UserWarning:
Blas (http://www.netlib.org/blas/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [blas]) or by setting
the BLAS environment variable.
self.calc_info()
C:\ProgramData\Anaconda3\lib\site-packages\numpy\distutils\system_info.py:639: UserWarning:
Blas (http://www.netlib.org/blas/) sources not found.
Directories to search for the sources can be specified in the
numpy/distutils/site.cfg file (section [blas_src]) or by setting
the BLAS_SRC environment variable.
self.calc_info()
{}
C:\ProgramData\Anaconda3\lib\site-packages\numpy\distutils\system_info.py:639: UserWarning:
Lapack (http://www.netlib.org/lapack/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [lapack]) or by setting
the LAPACK environment variable.
self.calc_info()
C:\ProgramData\Anaconda3\lib\site-packages\numpy\distutils\system_info.py:639: UserWarning:
Lapack (http://www.netlib.org/lapack/) sources not found.
Directories to search for the sources can be specified in the
numpy/distutils/site.cfg file (section [lapack_src]) or by setting
the LAPACK_SRC environment variable.
self.calc_info()
{}
Exception in thread Thread-1:
Traceback (most recent call last):
File "C:\ProgramData\Anaconda3\lib\threading.py", line 916, in _bootstrap_inner
self.run()
File "C:\ProgramData\Anaconda3\lib\threading.py", line 864, in run
self._target(*self._args, **self._kwargs)
File "C:\ProgramData\Anaconda3\lib\distutils\_msvccompiler.py", line 69, in _getall
all_packages.extend(_distutils_findvs.findall())
OSError: Error 80070002
error: Microsoft Visual C++ 14.0 is required. Get it with "Microsoft Visual C++ Build Tools": https://visualstudio.microsoft.com/downloads/
----------------------------------------
ERROR: Command "'C:\ProgramData\Anaconda3\python.exe' -u -c 'import setuptools, tokenize;__file__='"'"'C:\\Users\\Mandeep\\AppData\\Local\\Temp\\pip-install-assnbjrs\\scs\\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record 'C:\Users\Mandeep\AppData\Local\Temp\pip-record-qtt9_e2k\install-record.txt' --single-version-externally-managed --compile" failed with error code 1 in C:\Users\Mandeep\AppData\Local\Temp\pip-install-assnbjrs\scs\
(base) PS C:\WINDOWS\system32>```
1 answers
solution1
1 2019-06-03 13:15:03
- Download and Install Microsoft Build Tools 2015 (If don't have it already)
- Download scs and cvxpy wheels for your version of Python. (For me cp36 with amd64 worked, don't know why cp37 didn't work even though my Python version is 3.7.3)
Move .whl files to the subdir for Anaconda Prompt
Run following commands
conda install ecos
conda install (scs filename).whl
conda install (cvxpy filename).whl
pip install fancyimpute
Note: If .whl runs with an error, download and try other version.
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