I would like to flatten a jsonb column into multiple target columns in the same table. I cannot find a built-in function to accomplish this. The Glue crawler registers the jsonb column as a string. I can use Unbox.apply() to change this to a struct when I land the data on s3.
I have tried using Relationalize and UnnestFrame to denest the jsonb column. Neither work. Relationalize seems to apply only go .json files. I am not sure why UnnestFrame doesn't work.
import sys
from awsglue.transforms import *
from awsglue.utils import getResolvedOptions
from pyspark.context import SparkContext
from awsglue.context import GlueContext
from awsglue.job import Job
## @params: [JOB_NAME]
args = getResolvedOptions(sys.argv, ['JOB_NAME'])
sc = SparkContext()
glueContext = GlueContext(sc)
spark = glueContext.spark_session
job = Job(glueContext)
job.init(args['JOB_NAME'], args)
datasource0 = glueContext.create_dynamic_frame.from_catalog(database = "mycatalogdb", table_name = "sourcedb_public_tablename", transformation_ctx = "datasource0")
dfc = UnnestFrame.apply(frame = datasource0, transformation_ctx = "dfc", info="", stageThreshold=0, totalThreshold=0)
dropnullfields3 = DropNullFields.apply(frame = dfc, transformation_ctx = "dropnullfields3")
datasink4 = glueContext.write_dynamic_frame.from_options(frame = dropnullfields3, connection_type = "s3", connection_options = {"path": "s3://mybucket"}, format = "parquet", transformation_ctx = "datasink4")
job.commit()
Given a source table with the following
+----+------------+-------------------------------------------------------+
| id | date | myjson |
+----+------------+-------------------------------------------------------+
| 1 | 2019-10-10 | {"url":some-url,"data":{"afield":123,"moredata":567"} |
+----+------------+-------------------------------------------------------+
I would like this output (column name format doesn't matter as much as the tabular format)
+----+------------+----------+-------------+---------------+
| id | date | url | data_afield | data_moredata |
+----+------------+----------+-------------+---------------+
| 1 | 2019-10-10 | some-url | 123 | 567 |
+----+------------+----------+-------------+---------------+
I eventually figured out, I was using relationalize incorrectly, but Glue was not throwing an error. I was able to figure this out after using SageMaker interactively and realizing while reading this post that relationalize() returns a collection.
Relationalize can be used on a data frame containing json fields. Put another way, the data frame does not have to be from pure json.
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