I am trying to scan multiple files and search for two keywords in the same line. I am trying to look for the keywords "SEQADV" and "MUTATION" in the same line. The problem is I keep getting the error "NameError: name 'wt_residue' is not defined". When I search for one keyword "SEQADV", the program runs smoothly.
if 'SEQADV' and 'MUTATION' in line:
try:
mutation = line.split()
sequence_number = mutation[4]
chain = mutation[3]
mutant_residue = mutation[2]
wt_residue = mutation[7]
except IndexError:
pass
#Prints all data to the .csv file above and closes the file
print(",".join([pdb_name, mutant_residue, chain, sequence_number, wt_residue]), file=datafile)
datafile.close()
Try changing your if statement to if 'SEQADV' in line.split() and 'MUTATION' in line.split():
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