This is a bit old, but I'll answer in case it helps anyone in the future. Linbox has created a thread safe version of NTL. I have used some of the functionality from this version (namely GF2, GF2X, GF2E and GF2EX) successfully in the past by merging changes from this version into NTL version 5.5.2
http://linalg.org/projects/linalg/log/trunk/ntl/doc/multithreading.txt?rev=20
NTL is thread safe, you just need to compile it in a thread-safe manner. Configure before installing using the following command and it works fine:
./configure NTL_THREADS=on NTL_GMP_LIP=on
You'll need GMP installed in order to proceed though.
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