I read in a fMRI image where I want to calculate a certain measurement. outputs I want to extract the number (113.157831) in the end and save th ...

this is probably very simple and I'm just overlooking something but here you go: I have a 4D array in shape: (x,y,z,t) How do i iterate over the num ...

it's Pablo! I'm trying to make a script for DTI. I already have it with functions and nipype but now I'm trying with nodes yet there is one node whi ...

I have a command nipype.interface.afni.Warp which gives me the following python terminal output: 190920-12:22:00,333 nipype.interface INFO: ...

OSError: No command "N4BiasFieldCorrection" found on host pc. Please check that the corresponding package is installed. i have problem using nipype.c ...

I am trying to run a preprocessing pipeline using nipype and I get the following error message: and I am not sure what exactly might be wrong in m ...

I have already installed these: Sample code: It gives error: OSError: No command "fslmerge" found on host. Please check that the correspondi ...

I have a T1 image (NIFTI), already aligned, with dimension 121 x 145 x 121. The image is loaded by nibabel. The voxel size is 1.5 x 1.5 x 1.5 mm. I wa ...

I am trying to build a Workflow for normalization/coregistration. Here is my DataGrabber When I try with only one subject everything runs without p ...

Having problem with slicing niimg from nibabel.get_data(). When this function of Nipype tutorial was used, to run Then the result turns out to ...

I need to perform brain extraction on .nii images. I am using Anaconda on Windows 10 and have an environment based on Python 3.5.4. On Nipype I found ...

I am new to python or more specifically ipython. I have been running through the steps to run what should be a very simple Dicom Conversion in a stati ...

I'm using enthought canopy's traits to wrap a code for Nipype. I know format argument is %d for integer variables. However, Multiplication variable be ...

The partial code below works without any error: However, when I add a second Node with the same script(fslorient) an Attribute Error raises: Att ...

I'm trying to run a simple matlab interface on Nipype as below, but somehow it gets stuck in run() code. My command line does not proceed anymore . Bu ...

I am trying to replace our internal pipeline infrastructure with NiPype. As a test, I want to connect to simple functions where the first gets an inp ...

I am trying to use nipype to analyze transformation matrixes that were created by FSL. FSL has a script called "avscale" that analyzes those transform ...

I am trying to do some registration in python using the nipype package. It worked for basic registration: This yielded a successful registration. H ...