I am running qiime2-2022.8, on my Linux laptop (Ubuntu 22.04.1 LTS x86_64). Installed via conda. I went through entire moving pictures tutorial, ever ...
When installing the newest qiime2 version (2022.8) into a conda environment with the given yaml file on the official qiime2 website. The installation ...
Can anyone help me figure out why it took around 20G of my C disk to install QIIME2 through Docker? Thank you! Before installing QIIME2, I had 30GB ...
I've been trying to install QIIME2 on Linux with the command and get this error message: I even tried installing it another way using: and ge ...
My data is from 16S gene sequencing that went through illumina and it is paired-end, demultiplexed, and does NOT have barcodes. I went through the qii ...
In order to extract a frecuency table from a qiime2 artifact and write It to a tsv output you have to: Now, I have seven qiime2 artifacts I woul ...
How can I rename the header in R, based on information from the current header? My df look likes: header: (index; d__Bacteria.p__Actinobacteriota.c_ ...
Im trying to plot my PCOA with qiime2R and ggplot2 since I find 2D UniFrac plots more informative than those given with Emperor in 3D. So I followed t ...
I want to run multiple snakefiles called qc.smk , dada2.smk, picrust2.smkusing singularity. Then there is one snakefile called longitudinal.smk I woul ...
I'm trying to reproduce the dendogram results of this paper, concerning to an specific 16s rRNA analysis. But I don't know if there is a standard met ...
I am trying to install qiime1 environment using terminal on Mac. Currently getting an error saying packages not found for matplotlib 1.4.3. ...
I'm trying to reformat a text file so I can upload it to a pipeline (QIIME2) - I tested the first few lines of my .txt file (but it is tab separated), ...
I want to analyse data with QIIME2 on a Docker container. Note that this is my first time with Docker. I created the image and then the container, and ...
Does anyone have any suggestions on how to install Qiime2 on Colab? I can't seem to get it to work with !pip install qiime2. ...
I'm new in python, and somebody help me with this code, but I want to change some parameter: First the size of the legend out of the plot, some time ...
I am writing a program that runs qiime. I need the program to recognize numbers that the user types on the command line, but I think that subprocess.c ...
I am writing a program to automate some qiime2 commands. I want to incorporate user input. So far, I have: This works fine since there's only two ...
I have created a barplot for metagenomic data using RStudio But I am getting lines inside the bar.I need clear bars without any lines. How to do it ...
I just started to bash and I have been stuck for sometime on a simple if;then statement. I use bash to run QIIME commands which are written in python. ...
Simplified version of my problem: I have an OTU table with with 60 sample points (each with abundances for various OTUs) across three sites: A, B and ...