I am having an issue which I came across using the R package "sleuth" to analyze RNAseq data. The problem clearly depends on rhdf5, however. The issue ...
Goal Read the data component of a hdf5 file in R. Problem I am using rhdf5 to read hdf5 files in R. Out of 75 files, it successfully read 61 files. ...
I am trying to convert my h5 daily files into a raster format. I converted into raster format. When I extracted my area of interest. I could not extra ...
Say my data looks like this What is the most space-efficient way to store this time of data? I looked at Numpy files, but numpy only supports un ...
I'm having trouble writing strings to groups in hdf5 files using rhdf5 using the low-level API, and specifically the functions H5Fcreate H5Gcre ...
I have been given a crap ton of files I need to read over and graph. Some of the datasets have more files that other. So I need to write a loop that w ...
I am trying to install minfi in R: but the installation stops during the compiling of HDF5Array with the following errors: I've already installe ...
I have a '.h5' file and want to extract it using R. I searched and found rhdf5 from BiocManager is used for this purpose. I tried it and I got an er ...
When I am trying to write a dgcMatrix of 30 000x80 000 using rhdf5 in Rstudio: I am getting the error: Error in H5Dcreate(loc$H5Identifier, dat ...
I am using rhdf5 library. And I want to read many files at once. I have my .h5 files in folder input, then I was tring: It did not show any error. ...
I am new to hdf5 files. Trying to read some sample files from the below URL.. https://support.hdfgroup.org/ftp/HDF5/examples/files/exbyapi/ while try ...
I have a dataframe like this: and I want to select all the row and col values that are paired so I can insert them into a function. I am trying t ...
I daily have a time series in seconds since the job start (00:00h UTC). As I want to plot time series of other data, I want convert time series in sec ...
Objective I have 100 hdf5 files in a folder. For a reproducible example let's consider only 2 files, namely: Each hdf5 file contains 2 groups, da ...
I have created a dummy HDF5 object as Now, I want to retrieve only column names of objects df_A and df_B without reading the entire file rhd5file.h ...
I have a hdf5 file with multiple variables that I want to automatically store in a list or a matrix. I can access any variable in the file by typin ...
this question has been asked before but non of the answers is working for me. I am using the library rhdf5 from bioconductor.org to read HDF5 files: ...
Though it might seem similar to an already question: is-it-possible-to-update-dataset-dimensions-in-hdf5-file-using-rhdf5-in-r but they are not exactl ...