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Question

In a python 2.7 script, a first multiprocessing code to process a big chunk a numpy array. This is basically projection ray frameblock between an image plan and a Cartesian (world) plane. That part, called poo1 , works fine.

Further in the script, I attempt to reproduce the multiprocessing code to project a lot of images with this projection ray frameblock.

It seems that only 4 to 6 workers working but all of them is ready to work filling with data. The pool2 creates workers, they are slow growing in memory usage, only up to 6 of them are using CPU power.

Screenshot :

Notes :

• There is not output return to get from the multi-processed function, the output if a file writing in a folder;
• No worry about memory size issues, half TB available;
• No worry about the order of the process;
• Number of workers is physical CPU core - 1 = 27;
• The length of the list of jobs to distribute (paramsGeoRef) can be from 1 to 250 rows.

Arguments info :

• Frameclock, massive ndarray, can be GB
• A1: ndarray, can be hundrens of MB
• A2: ndarray, can be hundrens of MB
• B1: integer value
• B2: integer value
• fileName: string, name
• D1: string, path
• D2: string, path
• D3: string, path
• P1: small array
• P2: small array

A simplification of the code look like this :

    def georef(paramsGeoRef):

        #Pseudo workflow
        """
        - unpack arguments, Frameclock, A1,A2, B1, B2, fileName, D1, D2, D3, P1, P2 <== paramsGeoRef
        - Loading tif image
        - Evergy convertion
            with function and P1, P2
        - Proportional projection of the image
            - Frameclock, A1, A2
        - Evergy convertion
            with function and P1, P2
        - Figure creation
        - Geotiff creation
        - export into file figure, geotiff and numpy file
        """
        return None

if __name__ == '__main__':

    paramsGeoRef = []
    for im in imgfiles:
        paramsGeoRef.append([Frameclock, A1, A2, B1, B2, fileName, D1 , D2 , D3 , P1 , P2])
    if flag_parallel:
        cpus = multiprocessing.cpu_count()
        cpus = cpus - 1
        pool2 = multiprocessing.Pool(processes=cpus)
        pool2.map(georef, paramsGeoRef)
        pool2.close()
        pool2.join()

I tried different approaches, such as :

Unpack arguements before:

def star_georef(Frameclock, A1,A2, B1, B2, fileName, D1, D2, D3, P1, P2):
    return georef(*paramsGeoRef)

def georef(paramsGeoRef):
    #Pseudo workflow...
    return None

Used another map type:

pool2.imap_unordered()

What wrong? Why this method work for crunching numpy array, but not for this purpose? Need to handle a chunksize?

Maybe, I might need to feed workers as soon as they are available with a job generator?

Answer 1

Following Martineau advice,

I save the Frameclock, A1 and A2 arguements with with numpy in.npy format. Then I load the.npy inside the parallelized.

such as:

def georef(paramsGeoRef):

    #Pseudo workflow
    """
    - unpack arguments, Frameblock, A1,A2, B1, B2, fileName, D1, D2, D3, P1, P2 <== paramsGeoRef
    - load Frameblock from his .npy
    - load A1 from his .npy
    - load A2 from his .npy
    - Loading tif image
    - Evergy convertion
        with function and P1, P2
    - Proportional projection of the image
        - Frameclock, A1, A2
    - Evergy convertion
        with function and P1, P2
    - Figure creation
    - Geotiff creation
    - export into file figure, geotiff and numpy file
    """
    return None

Even with saving and loading these is a drastic efficiency gain. All worker works.