I'm having trouble reading multiple csv files from a directory.
The code works perfectly when running for the first file, but however I get an error on the second file. Below are the relevant sections of code. (some however is unnecessary for the question, I just left it in so it makes more sense):
def get_data(filename):
'''function to read the data form the input csv file to use in the analysis'''
with open(filename, 'r') as f:
reader = csv.reader(f,delimiter=',')
#returns all the data from the csv file in list form
return list(reader)
path='C:\Users\AClayton\Desktop\AW189 Data'
for infile in glob.glob(os.path.join(path, '*.csv')):
# infile stores the complete path of the file
print "Current File Being Processed is: " + infile
#use split to seperate the path and name of the file
(PATH, FILENAME) = os.path.split(infile)
print " PATH is " + PATH
print " FILENAME is " + FILENAME
all_data=[]
#adds the data from the csv file to a blank list so it can be operated on
all_data.extend(get_data(infile))
#Create array so numerical operations may be performed
arrdata=np.array(all_data)
current_tracks=establish_current_tacks(arrdata,nb)
rel_values=relative_track(current_tracks,nb)
avg_rel_track=averaged_rel_track(navg, rel_values, nb)
avg_rel_track_nan=avg_rel_track_nan(avg_rel_track)
sd_rel_track_sum=sd_of_rel_track(navg, rel_values, nb)
sd_index=sd_index(sd_rel_track_sum)
And this is my error:
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
C:\Users\AClayton\AppData\Local\Enthought\Canopy\App\appdata\canopy-1.0.3.1262.win-x86_64\lib\site-packages\IPython\utils\py3compat.pyc in execfile(fname, glob, loc)
174 else:
175 filename = fname
--> 176 exec compile(scripttext, filename, 'exec') in glob, loc
177 else:
178 def execfile(fname, *where):
C:\Users\AClayton\Desktop\currentmethod06_09_2013work-1.py in <module>()
204 rel_values=relative_track(current_tracks,nb)
205 avg_rel_track=averaged_rel_track(navg, rel_values, nb)
--> 206 avg_rel_track_nan=avg_rel_track_nan(avg_rel_track)
207 sd_rel_track_sum=sd_of_rel_track(navg, rel_values, nb)
208 sd_index=sd_index(sd_rel_track_sum)
TypeError: 'numpy.ndarray' object is not callable
I'm unsure what is causing this problem. It doen't seem to be reading the function as a function, but instead as the array from earlier? Thanks a lot for any advice
This is weird:
avg_rel_track_nan=avg_rel_track_nan(avg_rel_track)
You probably meant:
avg_rel_track_nan=averaged_rel_track_nan(avg_rel_track)
I can't tell for sure what is happening because a lot of your code depends on some other code but you are assigning the result of a (supposedly) function call to the name of this function. I'm guessing that's not what you meant to do.
Try:
def get_data(filename):
'''function to read the data form the input csv file to use in the analysis'''
reader = [] # Just in case the file open fails
with open(filename, 'r') as f:
reader = csv.reader(f,delimiter=',')
#returns all the data from the csv file in list form
#f.close() # May need to close the file when done
return list(reader) # only return the reader when you have finished.
I think part of the problem is you are returning from within the with, (and not closing the file)
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