good morning. I have this table:
mysql> select * from Data;
+---------------------------+--------+-------+
| affyId | exptId | level |
+---------------------------+--------+-------+
| 31315_at | 3 | 250 |
| 31324_at | 3 | 91 |
| 31325_at | 1 | 191 |
| 31325_at | 2 | 101 |
| 31325_at | 4 | 51 |
| 31325_at | 5 | 71 |
| 31325_at | 6 | 31 |
| 31356_at | 3 | 91 |
| 31362_at | 3 | 260 |
| 31510_s_at | 3 | 257 |
| 5321_at | 4 | 90 |
| 5322_at | 4 | 90 |
| 5323_at | 4 | 90 |
| 5324_at | 3 | 57 |
| 5324_at | 4 | 90 |
| 5325_at | 4 | 90 |
| AFFX-BioB-3_at | 3 | 97 |
| AFFX-BioB-5_at | 3 | 20 |
| AFFX-BioB-M_at | 3 | 20 |
| AFFX-BioB-M_at | 5 | 214 |
| AFFX-BioB-M_at | 7 | 20 |
| AFFX-BioB-M_at | 8 | 40 |
| AFFX-BioB-M_at | 9 | 20 |
| AFFX-HSAC07/X00351_M_at | 3 | 86 |
| AFFX-HUMBAPDH/M33197_3_st | 3 | 277 |
| AFFX-HUMTFFR/M11507_at | 3 | 90 |
| AFFX-M27830_3_at | 3 | 271 |
| AFFX-MurIL10_at | 3 | 8 |
| AFFX-MurIL10_at | 5 | 8 |
| AFFX-MurIL10_at | 6 | 4 |
| AFFX-MurIL2_at | 3 | 20 |
| AFFX-MurIL4_at | 5 | 78 |
| AFFX-MurIL4_at | 6 | 20 |
| U95-32123_at | 1 | 128 |
| U95-32123_at | 2 | 128 |
| U98-40474_at | 1 | 57 |
| U98-40474_at | 2 | 57 |
+---------------------------+--------+-------+
37 rows in set (0.00 sec)
If I wanna look for the average expression level (level) of each array probe (affyId) across all experiments, I do SELECT affyId, AVG(level) AS average FROM Data GROUP BY affyId;
However, I can't figure out how to look for the average expression level of each array probe (affyId) for each experiment... It must be something similar to the last query, but I don't obtain good results... any help?
PD: someone told me I should give some reputation or click to some green button if somebody solves my question... Is it right? How do I do it? I'm pretty new on this website...
Just add that to the group by
clause
SELECT affyId, exptId, AVG(level) AS average
FROM Data
GROUP BY affyId, exptId;
This shows the average for every affyId:
SELECT affyId, AVG(level) AS average FROM Data GROUP BY affyId
This the average for every exptId:
SELECT exptId, AVG(level) AS average FROM Data GROUP BY exptId
and this the average for every exptId in every affyId:
SELECT affyId, exptId, AVG(level) AS average FROM Data GROUP BY exptId, affyId
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