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Could not load file or assembly 'EntityFramework, Version=6.0.0.0 + Web API

As part of the upgrading my Asp.net WebAPI I upgraded the EntityFramework to the latest version. I am getting the following error.

(Tried all the solutions posted on Stackoverflow nothing worked)

Could not load file or assembly 'EntityFramework, Version=6.0.0.0, Culture=neutral, PublicKeyToken=b77a5c561934e089' or one of its dependencies. The system cannot find the file specified.

Web.config :

<?xml version="1.0" encoding="utf-8"?>
<!--
  For more information on how to configure your ASP.NET application, please visit
  http://go.microsoft.com/fwlink/?LinkId=169433
  -->
<configuration>
  <configSections>
    <section name="entityFramework" type="System.Data.Entity.Internal.ConfigFile.EntityFrameworkSection, EntityFramework, Version=6.0.0.0, Culture=neutral, PublicKeyToken=b77a5c561934e089" requirePermission="false" />
    <!-- For more information on Entity Framework configuration, visit http://go.microsoft.com/fwlink/?LinkID=237468 -->
  </configSections>
  <connectionStrings>      


  </connectionStrings>
  <appSettings>
    <add key="webpages:Version" value="3.0.0.0" />
    <add key="webpages:Enabled" value="false" />
    <add key="PreserveLoginUrl" value="true" />
    <add key="ClientValidationEnabled" value="true" />
    <add key="UnobtrusiveJavaScriptEnabled" value="true" />

  </appSettings>
  <!--
    For a description of web.config changes see http://go.microsoft.com/fwlink/?LinkId=235367.

    The following attributes can be set on the <httpRuntime> tag.
      <system.Web>
        <httpRuntime targetFramework="4.5.1" />
      </system.Web>
  -->
  <system.web>
    <compilation debug="true" targetFramework="4.5.1" />
    <httpRuntime targetFramework="4.5" />
    <authentication mode="None" />
    <pages>
      <namespaces>
        <add namespace="System.Web.Helpers" />
        <add namespace="System.Web.Mvc" />
        <add namespace="System.Web.Mvc.Ajax" />
        <add namespace="System.Web.Mvc.Html" />
        <add namespace="System.Web.Optimization" />
        <add namespace="System.Web.Routing" />
        <add namespace="System.Web.WebPages" />
      </namespaces>
    </pages>
    <profile defaultProvider="DefaultProfileProvider">
      <providers>
        <add name="DefaultProfileProvider" type="System.Web.Providers.DefaultProfileProvider, System.Web.Providers, Version=2.0.0.0, Culture=neutral, PublicKeyToken=31bf3856ad364e35" connectionStringName="DefaultConnection" applicationName="/" />
      </providers>
    </profile>
    <membership defaultProvider="DefaultMembershipProvider">
      <providers>
        <add name="DefaultMembershipProvider" type="System.Web.Providers.DefaultMembershipProvider, System.Web.Providers, Version=2.0.0.0, Culture=neutral, PublicKeyToken=31bf3856ad364e35" connectionStringName="DefaultConnection" enablePasswordRetrieval="false" enablePasswordReset="true" requiresQuestionAndAnswer="false" requiresUniqueEmail="false" maxInvalidPasswordAttempts="5" minRequiredPasswordLength="6" minRequiredNonalphanumericCharacters="0" passwordAttemptWindow="10" applicationName="/" />
      </providers>
    </membership>
    <roleManager defaultProvider="DefaultRoleProvider">
      <providers>
        <add name="DefaultRoleProvider" type="System.Web.Providers.DefaultRoleProvider, System.Web.Providers, Version=2.0.0.0, Culture=neutral, PublicKeyToken=31bf3856ad364e35" connectionStringName="DefaultConnection" applicationName="/" />
      </providers>
    </roleManager>
    <!--
            If you are deploying to a cloud environment that has multiple web server instances,
            you should change session state mode from "InProc" to "Custom". In addition,
            change the connection string named "DefaultConnection" to connect to an instance
            of SQL Server (including SQL Azure and SQL  Compact) instead of to SQL Server Express.
      -->
    <sessionState mode="InProc" customProvider="DefaultSessionProvider">
      <providers>
        <add name="DefaultSessionProvider" type="System.Web.Providers.DefaultSessionStateProvider, System.Web.Providers, Version=2.0.0.0, Culture=neutral, PublicKeyToken=31bf3856ad364e35" connectionStringName="DefaultConnection" />
      </providers>
    </sessionState>
  </system.web>
  <system.webServer>
    <validation validateIntegratedModeConfiguration="false" />
    <handlers>
      <remove name="ExtensionlessUrlHandler-Integrated-4.0" />
      <remove name="OPTIONSVerbHandler" />
      <remove name="TRACEVerbHandler" />
      <add name="ExtensionlessUrlHandler-Integrated-4.0" path="*." verb="*" type="System.Web.Handlers.TransferRequestHandler" preCondition="integratedMode,runtimeVersionv4.0" />
    </handlers>
  </system.webServer>
  <runtime>
    <assemblyBinding xmlns="urn:schemas-microsoft-com:asm.v1">
      <dependentAssembly>
        <assemblyIdentity name="Ninject" publicKeyToken="c7192dc5380945e7" culture="neutral" />
        <bindingRedirect oldVersion="0.0.0.0-3.0.0.0" newVersion="3.0.0.0" />
      </dependentAssembly>
      <dependentAssembly>
        <assemblyIdentity name="EntityFramework" publicKeyToken="b77a5c561934e089" culture="neutral" />
        <bindingRedirect oldVersion="0.0.0.0-6.0.0.0" newVersion="6.0.0.0" />
      </dependentAssembly>
      <dependentAssembly>
        <assemblyIdentity name="System.Web.Helpers" publicKeyToken="31bf3856ad364e35" />
        <bindingRedirect oldVersion="1.0.0.0-3.0.0.0" newVersion="3.0.0.0" />
      </dependentAssembly>
      <dependentAssembly>
        <assemblyIdentity name="System.Web.WebPages" publicKeyToken="31bf3856ad364e35" />
        <bindingRedirect oldVersion="1.0.0.0-3.0.0.0" newVersion="3.0.0.0" />
      </dependentAssembly>
      <dependentAssembly>
        <assemblyIdentity name="System.Web.Mvc" publicKeyToken="31bf3856ad364e35" />
        <bindingRedirect oldVersion="0.0.0.0-5.1.0.0" newVersion="5.1.0.0" />
      </dependentAssembly>
      <dependentAssembly>
        <assemblyIdentity name="WebGrease" publicKeyToken="31bf3856ad364e35" culture="neutral" />
        <bindingRedirect oldVersion="0.0.0.0-1.6.5135.21930" newVersion="1.6.5135.21930" />
      </dependentAssembly>
    </assemblyBinding>
  </runtime>
  <entityFramework>
    <defaultConnectionFactory type="System.Data.Entity.Infrastructure.SqlConnectionFactory, EntityFramework" />
    <providers>
      <provider invariantName="System.Data.SqlClient" type="System.Data.Entity.SqlServer.SqlProviderServices, EntityFramework.SqlServer" />
    </providers>
  </entityFramework>
</configuration>

The problem was related to virtual directory. The project got mapped to wrong virtual directory.

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