I am trying to programmatically use this tool http://www.idtdna.com/calc/analyzer so that I can batch analyze a few dozen DNA sequences.
Peeking inside Chrome's developer tools, I see that I am sending a POST request when I click the Analyze button (after entering a sequence (eg "AACCGGTT") in the Sequence field). In the Response tab, I can also see the response (eg "MeltTemp") that I wish to collect. So, following the tutorial ( http://docs.python-requests.org/en/latest/user/quickstart/#make-a-request ), I put together the snippet below, but it's clearly not working.
>>> import requests
>>> url = 'http://www.idtdna.com/calc/analyzer/home/analyze' # from: ChromeDevTools -> Network -> Name: analyze -> tab: Headers -> General -> Request URL
>>> data = {"settings":{"Sequence":"AACCGGTT", # from: ChromeDevTools -> Network -> Name: analyze -> tab: Headers -> Request Payload
"NaConc":50,
"MgConc":0,
"DNTPsConc":0,
"OligoConc":0.25,
"NucleotideType":"DNA",
}}
>>> r = requests.post(url, data=data)
>>> r.url # 404 page
u'http://www.idtdna.com/404.aspx?aspxerrorpath=/calc/analyzer/home/analyze'
# I was hoping for something like this that gives me the JSON response (which can be found at
# ChromeDevTools -> Network -> Name: analyze -> tab: Response)
>>> r.some_magical_function()
{"Sequence":"AAC CGG TTG GTT AAT T","NaConc":50, ... "MeltTemp":45.1, ...}
What am I missing?
Does the post request need to be way more complicated (with cookies? session??)? If so, please provide pointers to what I need to learn (or the solution :p)
I understand if the website has safeguards against this kind of usage; if it's basically impossible, then what strategy do you suggest?selenium?
request.Session
to set cookie) json=...
argument) import requests
url = 'http://sg.idtdna.com/calc/analyzer/home/analyze'
data = {
'settings': {
'Sequence': 'AACCGGTT',
'NaConc': 50,
'MgConc': 0,
'DNTPsConc': 0,
'OligoConc': 0.25,
'NucleotideType': 'DNA',
}
}
s = requests.Session()
s.get('http://sg.idtdna.com/calc/analyzer') # to set cookies
r = s.post(url, json=data)
print(r.json())
UPDATE
Depending on location, redirection does not happen. In such case use www.idtdna.com
instead of sg.idtdna.com
.
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