Error in installing spacy in anaconda in windows
Question
Not able to install spacy, tensorflow, librosa in anaconda, every time it says permission denied.
I have tried installing it from anaconda prompt and also from the jupyter notebook using pip, but has not worked.
conda install -c conda-forge spacy
Error message :
conda install -c conda-forge spacy
Solving environment: done
==> WARNING: A newer version of conda exists. <==
current version: 4.4.10
latest version: 4.6.14
Please update conda by running
$ conda update -n base conda
## Package Plan ##
environment location: C:\ProgramData\Anaconda3
added / updated specs:
- spacy
The following packages will be downloaded:
package | build
---------------------------|-----------------
mkl-2018.0.3 | 1 178.1 MB
numpy-1.15.4 | py36ha559c80_0 36 KB
thinc-7.0.4 | py36he980bc4_0 1.4 MB conda-forge
mkl_random-1.0.2 | py36_0 267 KB conda-forge
wasabi-0.2.2 | py_0 18 KB conda-forge
numpy-base-1.15.4 | py36h8128ebf_0 3.9 MB
plac-0.9.6 | py_1 18 KB conda-forge
tqdm-4.32.1 | py_0 41 KB conda-forge
cython-blis-0.2.4 | py36hfa6e2cd_0 2.6 MB conda-forge
srsly-0.0.7 | py36h6538335_0 185 KB conda-forge
spacy-2.1.4 | py36he980bc4_0 89.0 MB conda-forge
cymem-2.0.2 | py36h74a9793_0 35 KB
ca-certificates-2019.6.16 | hecc5488_0 183 KB conda-forge
preshed-2.0.1 | py36h33f27b4_0 70 KB
mkl_fft-1.0.10 | py36_0 130 KB conda-forge
murmurhash-1.0.0 | py36h6538335_0 17 KB conda-forge
------------------------------------------------------------
Total: 275.8 MB
The following NEW packages will be INSTALLED:
blas: 1.0-mkl
cymem: 2.0.2-py36h74a9793_0
cython-blis: 0.2.4-py36hfa6e2cd_0 conda-forge
mkl_fft: 1.0.10-py36_0 conda-forge
mkl_random: 1.0.2-py36_0 conda-forge
murmurhash: 1.0.0-py36h6538335_0 conda-forge
numpy-base: 1.15.4-py36h8128ebf_0
plac: 0.9.6-py_1 conda-forge
preshed: 2.0.1-py36h33f27b4_0
spacy: 2.1.4-py36he980bc4_0 conda-forge
srsly: 0.0.7-py36h6538335_0 conda-forge
thinc: 7.0.4-py36he980bc4_0 conda-forge
tqdm: 4.32.1-py_0 conda-forge
wasabi: 0.2.2-py_0 conda-forge
The following packages will be UPDATED:
ca-certificates: 2017.08.26-h94faf87_0 --> 2019.6.16-hecc5488_0
conda-forge
certifi: 2018.1.18-py36_0 --> 2019.3.9-py36_0
conda-forge
mkl: 2018.0.1-h2108138_4 --> 2018.0.3-1
numpy: 1.14.0-py36h4a99626_1 --> 1.15.4-py36ha559c80_0
openssl: 1.0.2n-h74b6da3_0 --> 1.0.2r-hfa6e2cd_0
conda-forge
vc: 14-h0510ff6_3 --> 14.1-h0510ff6_4
vs2015_runtime: 14.0.25123-3 --> 14.15.26706-h3a45250_
4
Proceed ([y]/n)? y
Downloading and Extracting Packages
mkl 2018.0.3: ######################################################### | 100%
numpy 1.15.4: ######################################################### | 100%
thinc 7.0.4: ########################################################## | 100%
mkl_random 1.0.2: ##################################################### | 100%
wasabi 0.2.2: ######################################################### | 100%
numpy-base 1.15.4: #################################################### | 100%
plac 0.9.6: ########################################################### | 100%
tqdm 4.32.1: ########################################################## | 100%
cython-blis 0.2.4: #################################################### | 100%
srsly 0.0.7: ########################################################## | 100%
spacy 2.1.4: ########################################################## | 100%
cymem 2.0.2: ########################################################## | 100%
ca-certificates 2019.6.16: ############################################ | 100%
preshed 2.0.1: ######################################################## | 100%
mkl_fft 1.0.10: ####################################################### | 100%
murmurhash 1.0.0: ##################################################### | 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: failed
ERROR conda.core.link:_execute(481): An error occurred while uninstalling packag
e 'defaults::numpy-1.14.0-py36h4a99626_1'.
PermissionError(13, 'Access is denied')
Attempting to roll back.
Rolling back transaction: done
PermissionError(13, 'Access is denied')
While installing from jupyter I get the following error :
!pip install spacy
Collecting spacy
Downloading https://files.pythonhosted.org/packages/83/26/b829c281ea584cd1d3889e40b57527782b748cbd91e753796506210f8bb4/spacy-2.1.4-cp36-cp36m-win_amd64.whl (29.0MB)
Collecting murmurhash<1.1.0,>=0.28.0 (from spacy)
Downloading https://files.pythonhosted.org/packages/15/8f/0dad3ca706e31258cf7b9adf40f8d2103444a09dd7d66d46cf6980025c65/murmurhash-1.0.2-cp36-cp36m-win_amd64.whl
Collecting blis<0.3.0,>=0.2.2 (from spacy)
Downloading https://files.pythonhosted.org/packages/84/0e/35f8ce00fc3412aa3a888a3d8e040c4c65ccbad8310aa2981d3e6f379867/blis-0.2.4-cp36-cp36m-win_amd64.whl (3.1MB)
Collecting preshed<2.1.0,>=2.0.1 (from spacy)
Downloading https://files.pythonhosted.org/packages/a6/c0/3c238c146ed72f92a1cc3771fa3f66091b80d2a8e15b7c987912443b7843/preshed-2.0.1-cp36-cp36m-win_amd64.whl (73kB)
Requirement already satisfied: jsonschema<3.1.0,>=2.6.0 in c:\programdata\anaconda3\lib\site-packages (from spacy)
Collecting srsly<1.1.0,>=0.0.5 (from spacy)
Downloading https://files.pythonhosted.org/packages/8c/b5/75b8284a3ec9d6cc98a3fef0a581bf0b3493adabb1d33751fc1aa969f4e3/srsly-0.0.7-cp36-cp36m-win_amd64.whl (171kB)
Collecting wasabi<1.1.0,>=0.2.0 (from spacy)
Downloading https://files.pythonhosted.org/packages/f4/c1/d76ccdd12c716be79162d934fe7de4ac8a318b9302864716dde940641a79/wasabi-0.2.2-py3-none-any.whl
Collecting plac<1.0.0,>=0.9.6 (from spacy)
Downloading https://files.pythonhosted.org/packages/9e/9b/62c60d2f5bc135d2aa1d8c8a86aaf84edb719a59c7f11a4316259e61a298/plac-0.9.6-py2.py3-none-any.whl
Collecting numpy>=1.15.0 (from spacy)
Using cached https://files.pythonhosted.org/packages/20/ed/e036d31a9b2c750f270cbb1cfc1c0f94ac78ae504eea7eec3267be4e294a/numpy-1.16.4-cp36-cp36m-win_amd64.whl
Requirement already satisfied: requests<3.0.0,>=2.13.0 in c:\programdata\anaconda3\lib\site-packages (from spacy)
Collecting thinc<7.1.0,>=7.0.2 (from spacy)
Downloading https://files.pythonhosted.org/packages/12/b0/2c6c0f0edd87a3a4ac039bec792a61603233901a6df53e976d746eb86d04/thinc-7.0.4-cp36-cp36m-win_amd64.whl (1.9MB)
Collecting cymem<2.1.0,>=2.0.2 (from spacy)
Downloading https://files.pythonhosted.org/packages/c2/93/4b543adf6c0d73ed4e05d92abfb644c2743cd656adc8058510fdfac80680/cymem-2.0.2-cp36-cp36m-win_amd64.whl
Requirement already satisfied: chardet<3.1.0,>=3.0.2 in c:\programdata\anaconda3\lib\site-packages (from requests<3.0.0,>=2.13.0->spacy)
Requirement already satisfied: idna<2.7,>=2.5 in c:\programdata\anaconda3\lib\site-packages (from requests<3.0.0,>=2.13.0->spacy)
Requirement already satisfied: urllib3<1.23,>=1.21.1 in c:\programdata\anaconda3\lib\site-packages (from requests<3.0.0,>=2.13.0->spacy)
Requirement already satisfied: certifi>=2017.4.17 in c:\programdata\anaconda3\lib\site-packages (from requests<3.0.0,>=2.13.0->spacy)
Collecting tqdm<5.0.0,>=4.10.0 (from thinc<7.1.0,>=7.0.2->spacy)
Downloading https://files.pythonhosted.org/packages/9f/3d/7a6b68b631d2ab54975f3a4863f3c4e9b26445353264ef01f465dc9b0208/tqdm-4.32.2-py2.py3-none-any.whl (50kB)
Installing collected packages: murmurhash, numpy, blis, cymem, preshed, srsly, wasabi, plac, tqdm, thinc, spacy
Found existing installation: numpy 1.14.0
Uninstalling numpy-1.14.0:
Exception:
Traceback (most recent call last):
File "C:\ProgramData\Anaconda3\lib\shutil.py", line 544, in move
os.rename(src, real_dst)
PermissionError: [WinError 5] Access is denied: 'c:\\programdata\\anaconda3\\lib\\site-packages\\numpy' -> 'C:\\Users\\SHREYA~1.TRI\\AppData\\Local\\Temp\\pip-inr_379k-uninstall\\programdata\\anaconda3\\lib\\site-packages\\numpy'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\ProgramData\Anaconda3\lib\site-packages\pip\basecommand.py", line 215, in main
status = self.run(options, args)
File "C:\ProgramData\Anaconda3\lib\site-packages\pip\commands\install.py", line 342, in run
prefix=options.prefix_path,
File "C:\ProgramData\Anaconda3\lib\site-packages\pip\req\req_set.py", line 778, in install
requirement.uninstall(auto_confirm=True)
File "C:\ProgramData\Anaconda3\lib\site-packages\pip\req\req_install.py", line 754, in uninstall
paths_to_remove.remove(auto_confirm)
File "C:\ProgramData\Anaconda3\lib\site-packages\pip\req\req_uninstall.py", line 115, in remove
renames(path, new_path)
File "C:\ProgramData\Anaconda3\lib\site-packages\pip\utils\__init__.py", line 267, in renames
shutil.move(old, new)
File "C:\ProgramData\Anaconda3\lib\shutil.py", line 556, in move
rmtree(src)
File "C:\ProgramData\Anaconda3\lib\shutil.py", line 494, in rmtree
return _rmtree_unsafe(path, onerror)
File "C:\ProgramData\Anaconda3\lib\shutil.py", line 389, in _rmtree_unsafe
onerror(os.unlink, fullname, sys.exc_info())
File "C:\ProgramData\Anaconda3\lib\shutil.py", line 387, in _rmtree_unsafe
os.unlink(fullname)
PermissionError: [WinError 5] Access is denied: 'c:\\programdata\\anaconda3\\lib\\site-packages\\numpy\\add_newdocs.py'
You are using pip version 9.0.1, however version 19.1.1 is available.
You should consider upgrading via the 'python -m pip install --upgrade pip' command.
Tried this too after a suggestion but doesn't work !
(base) C:\Users\companyadmin>conda update -n base conda
Solving environment: done
## Package Plan ##
environment location: C:\ProgramData\Anaconda3
added / updated specs:
- conda
The following packages will be downloaded:
package | build
---------------------------|-----------------
conda-4.6.14 | py36_0 2.1 MB
The following packages will be UPDATED:
conda: 4.4.10-py36_0 --> 4.6.14-py36_0
Proceed ([y]/n)? y
Downloading and Extracting Packages
conda 4.6.14: ######################################################### | 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: failed
ERROR conda.core.link:_execute(481): An error occurred while uninstalling packag
e 'defaults::conda-4.4.10-py36_0'.
PermissionError(13, 'Access is denied')
Attempting to roll back.
Rolling back transaction: done
PermissionError(13, 'Access is denied')
2 answers
solution1
0 2019-06-19 11:56:46
我认为卸载 numpy 或更新所有包conda update --all也包括 numpy 可以解决这个问题。
solution2
0 2021-05-10 18:39:05
If all the other solutions didn't worked out, just uninstall Anaconda and install it again. This resolved my problem on mac. Of course you'll lose all the installed environments and some packages under Anaconda, so you may probably need to install the required ones later.
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