I would like to write a script that installs JAGS and rjags on a new ubuntu installation, and that will work independently of the currently available versions of these packages. I'd like to know how I can do this while avoiding conflicts between versions.
I have the following R script, initialize.R
:
system('apt-get install jags')
install.packages('rjags')
So that I can run from bash:
sudo R --vanilla < initialize.R
However, the most recent version of JAGS in the Ubuntu repository is 2.2, and the version of rjags available from CRAN depends on JAGS > 3.0.
I am interested in installing compatable JAGS
and rjags
, perhaps either:
The ability to do case 1 is essential, but am also curious how I could implement cases 2 and/or 3.
questions:
update: following link in Dirk's answer, the following worked:
add-apt-repository ppa:marutter/rrutter
apt-get update
apt-get install r-cran-rjags
Michael Rutter provides an r-cran-rjags
package via his repository; this works with the jags package you already have installed. See this message on r-sig-devel for details, and you may want to subscribe to and follow the r-sig-debian list to stay abreast of these things.
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