I debuted recently on ete3 (on Python3), and for debugging purposes I would find convenient to display two trees side to side, as in matplotlib.pyplot ...
I debuted recently on ete3 (on Python3), and for debugging purposes I would find convenient to display two trees side to side, as in matplotlib.pyplot ...
I followed the directions to install etetoolkit for mac. I get an error when I run conda install -c etetoolkit ete3 ete_toolchain Error: Unsa ...
I a linux user and so far I've using ete3 in python2 succesfully. I installed ete3 for python3 and there are certain modules that python3 can't find. ...
This question is related to: How to get taxonomic specific ids for kingdom, phylum, class, order, family, genus and species from taxid? The solution ...
How how can I add different colors for guiding line (connecting leaf node with the text using guiding_lines_color in TreeStyle class) in ETE3 python m ...
I just started using ete3 and it is awesome. How can I color the leaves of an ete3 Tree object using a color dictionary? I made "c":None because I d ...
I have drawn a tree in python using ete2 commands Tree(), .add_child(), .add_sister() and so on. Is there any way I can convert this tree to the corre ...
I have looked at some other questions about module installation and Python documentation, but I cannot succeed in installing ete2 on Python 2.7. I ha ...
I have a list of taxids that looks like this: I am looking to get a file with taxonomic ids in order from the taxids above: I am using the packa ...
I'd like to change the orientation of font faces on the output image that is produced by ETE Toolkit: http://etetoolkit.org For some reason rotation ...
I am trying to make a phylogenetic tree using the python package ete2 from synthetic data output from a cellular automaton model of mine. The data con ...
I would like to create my own layout for dendrogram in ete2. I have very specific needs to customize the tree node by node (i.e every node has differe ...
I have a tree t which some of its nodes has an attribute 'a' I want to test if a given node has this attribute, what I did is but I'm getting an e ...
I have a large tree where I want to get for each leaf node the path (all nodes) till the root. I'm trying to do this using ete2 but the tree is so la ...
I wrote a program which calculates the distance between two trees. The trees are already rooted. I want to make sure that the trees are rooted on the ...
I need to store and then operate (add new nodes, search through, etc) a tree where every node is a pair of x,y coordinates. I found ete2 module to wor ...
I'm trying to remove a set of nodes from a given tree file. this is my code: ` arthropods.nw is a newick tree file this is an extract: taxid ...
I have been trying to add different images to nodes in a phylogenetic tree using the ete2 software in Python, but have no success. These are error ...
I was trying to get configure one parse tree for the below HTML table,but couldn't form it.I want to see how the tree structure looks like!can anyone ...
I have a list of vectors created by running: where document_list is a collection of web documents I am analysing. I then perform hierarchical clust ...