What is the best approach to migrate window service built in C#.net to a linux non .net base. What language will best suited for the task? what are the issues that can rise? and if the window service uses much I/O operation what should the optimal solution for that. technologically wise and dependency wise.?
What about C#: Have you considered using Mono ?
Java shares much syntax with C#, so that's not the hard part. You have to consider all the frameworks/libraries etc. Mono does provide a lot of compatible libraries.
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