I have installed bioperl on WSL Ubuntu 18.04 with sudo apt-get install bioperl bioperl-run. I tried to install Bio::Grep with cpanm but it failed. Fro ...
I have installed bioperl on WSL Ubuntu 18.04 with sudo apt-get install bioperl bioperl-run. I tried to install Bio::Grep with cpanm but it failed. Fro ...
I used Ubuntu 18.04 LTS for Windows from Microsoft store and tried to install BioPerl module Bio::SeqIO with cpanm Bio::SeqIO. Perl version is v5.26.1 ...
I am using conda to install several packages. I already installed Perl under conda and is the one working in this machine (running Ubuntu 18.04). Now ...
I got segmentation fault (core dumped) error when I try read SCF file. I'm using Bio::SCF module in perl and just followed the example from "https:/ ...
I have 2 csv and text files, file 1 has 2 columns one with gene id and two with gene name,file 2 has many columns with part of the string in columns b ...
I am trying to install a Perl Module Bio::Tools::Run::Alignment::Muscle. I am using this docker image: When I try to install with cpanm by entering ...
I am translating a fasta nucleotide file into protein sequences by this code I implement threads and threads::shared perl modules to achieve in ot ...
I am having some issues installing Bio-DB-HTS (https://github.com/Ensembl/Bio-DB-HTS) requried to run a perl script from a cloned git repository. Sys ...
In the NCBI gene database, I can add the expression tracks (circled in picture blow) through 'Tracks' button, but How I can download the expression da ...
I've written a small Perl script that uses the Bio::Seq and Bio::SeqIO packages. When I try to run the script on a linux-based server. I got a lot of ...
I'm trying to sort a multiFASTA file by length. I have the alphabetical sort figured out but I can't seem to get the numerical sort. The output should ...
I'm working on a project that's scalating a lot, lately, and I'm re-writing code to make it more OOP and passing all redundant code into sub-routines. ...
Hi I am trying to install VelvetOptimizer using docker. and it say Can't locate Bio/SeqIO.pm in @INC. It requires the following to be installed: Velve ...
I want to write a subroutine that takes a FASTA file as an argument and prints out the sequence (without the header). The subroutine should check if t ...
I get an error such as "can't call method 'xxxx' on an undefined value" when attempting to check if an object has been created (by the perl module Bio ...
I want to create unique IDs for file with gene transcripts. Each row consists of transcript_id and intron coordinated in the format: chromosome:start_ ...
I am trying to analyze several thousand sequences for double restriction enzyme cuts. For this example, let's say these two enzymes are EcoRI and MspI ...
I wanted to get some advice on an error I am getting on my mac whenever I try to launch CPAN. I'm trying to install BioPerl on my machine, but wheneve ...
Good evening, i have a bioperl code to count the number of sequences in a fasta file, but i am trying to modify the code to count sequences shorter th ...
I'm trying to get biotools working on my Mac so that I can run some Perl5 code that uses Bio::DB::Sam, but am stymied. Mac OS X 10.10.4 perl 5.1 ...