I am trying to use OpenCV to combine two .AVI videos, but having little success. I want a combined final video that plays the two videos sequentially. ...

I am working on a macro for ImageJ. The goal is to take colour scans with several seeds on them and crop around the seeds to get several equally sized ...

I'm currently trying to batch process a lot of lab images at once using ImageJ/Fiji but I'm having a hard time making it process the images. Whenever ...

I have a macro in Fiji where I am using the waitForUser("For creating the plot", "Make a line along the diameter of the cell and press OK") code and I ...

I have just downloaded Fiji on Linux 64 bits for visualizing ome.tif files. I haven't modified any setting but it can't open my files. I am getting t ...

I am trying to stitch images using the MosaicJ plugin in Fiji (ImageJ), however, I get the error in the code below. Does anyone know what it means and ...

I'm struggling with imagej on Jupyter. This is part of the code that i'm running: and the output is: The ImageJ is already in the applications a ...

In R, I have a matrix that equals an image, where each cell is 0 if it is background and >0 if it is a ROI. Each ROI has its distinct number, so if ...

imageName=getTitle(); #This returns a string with the entire path of where the image is. image1 = split(imageName,"/"); #splits the image where "/" i ...

I want to automatically count cells and I usually do this with ImageJ I can open imagej using subprocess I want to upload an image into imagej fro ...

I am trying to write a macro for ImageJ that processes the images in the specified folder through the OrientationJ Vector Field plugin, and then saves ...

I try to analyze images with Fiji. Therefore I first “calibrate” the scale with set scale run(“Set Scale…”, “distance=52.6 known=30 pixel=1 unit=no gl ...

I'm new to ImageJ and ImageJ macro. I started to make a macro that apply the "Find Maxima" function on an image. Then I would like to test each pixel ...

I am new to ImageJ macros and I want to use a macro in Fiji. The code for the macro is from this source. I have downloaded the code and saved it as ...

Is there a way of how to subtract one stack of images from another stack using FIJI (ImageJ)? To be more specific, I would like to find a quick way f ...

I would like to convert an integer into a string with leading zeros in ImageJ / Fiji macro editor using String.format() function. With this code: I ...

New to FIJI and ImageJ here, so I apologize if this question sounds idiotic to the veterans. I came across a really cool toolset that can deblur laser ...

So far, I exectuted my jython plugins from the script editor in Fiji. I would like to execute my jython scripts from in the command line. When execut ...

I'm in a process to write a code in order to process my tiff files . I manage to load tif files with 20 to 30 slices but when I proceed to work on my ...

So I want to navigate the file system from within a Fiji script, and create files. macOS uses / as a separator while windows uses \ as a file separato ...