![](/img/trans.png)
[英]How can I aggregate geocoded data by a shapefile polygon for visualisation using R?
[英]How can I handle an “orphaned hole” in a polygon shapefile in R or ArcGIS?
我試圖使用over函數(rgeos)在兩個多邊形(“grd”和“range”)之間進行空間疊加。
此代碼適用於所有文件但只有一個:
range.grd.overlay <- grd[!is.na(over(grd, range)), ]@data$grdID # get gridcells that overlap with range
並收到此錯誤消息:
Error in createPolygonsComment(p) :
rgeos_PolyCreateComment: orphaned hole, cannot find containing polygon for hole at index 9
我知道shapefile中有一個沒有周圍多邊形的洞,但我無法弄清楚如何解決它。 我可以簡單地刪除索引9處的洞嗎? 怎么樣 ? 如果您有一個解決方案來修復ArcGIS中的shapefile,那對我來說也沒問題。
非常感謝您的幫助!
此致,卡斯滕
grd
和range
都屬於SpatialPolygonsDataFrame
類。
range
有這樣的結構:
> str(range)
Formal class 'SpatialPolygonsDataFrame' [package "sp"] with 5 slots
..@ data :'data.frame': 3 obs. of 17 variables:
.. ..$ OBJECTID : int [1:3] 725 726 727
.. ..$ SPCRECID : int [1:3] 3313 3313 3313
.. ..$ DATE_ : Factor w/ 1 level "19/10/2009": 1 1 1
.. ..$ SCINAME : Factor w/ 1 level "Synthliboramphus antiquus": 1 1 1
.. ..$ SOURCE : Factor w/ 1 level "Gaston & Jones, 1998; Brazil, 2009": 1 1 1
.. ..$ PRESENCE : int [1:3] 1 1 1
.. ..$ ORIGIN : int [1:3] 1 1 1
.. ..$ SEASONAL : int [1:3] 2 1 3
.. ..$ DATA_SENS : Factor w/ 0 levels: NA NA NA
.. ..$ SENS_COMM : Factor w/ 0 levels: NA NA NA
.. ..$ COMPILER : Factor w/ 1 level "Philip Taylor (BirdLife International)": 1 1 1
.. ..$ TAX_COM : Factor w/ 0 levels: NA NA NA
.. ..$ DIST_COM : Factor w/ 0 levels: NA NA NA
.. ..$ REVIEWERS : Factor w/ 0 levels: NA NA NA
.. ..$ CITATION : Factor w/ 1 level "BirdLife International and Natureserve (2011) Bird species distribution maps of the world.": 1 1 1
.. ..$ SHAPE_Leng: num [1:3] 190 209 1240
.. ..$ SHAPE_Area: num [1:3] 39 16.6 600.8
.. ..- attr(*, "data_types")= chr [1:17] "N" "N" "C" "C" ...
..@ polygons :List of 3
.. ..$ :Formal class 'Polygons' [package "sp"] with 5 slots
.. .. .. ..@ Polygons :List of 138
.. .. .. .. ..$ :Formal class 'Polygon' [package "sp"] with 5 slots
.. .. .. .. .. .. ..@ labpt : num [1:2] 178.6 51.8
.. .. .. .. .. .. ..@ area : num 4.58
.. .. .. .. .. .. ..@ hole : logi FALSE
.. .. .. .. .. .. ..@ ringDir: int 1
.. .. .. .. .. .. ..@ coords : num [1:49, 1:2] 180 180 179 179 179 ...
.. .. .. .. ..$ :Formal class 'Polygon' [package "sp"] with 5 slots
.. .. .. .. .. .. ..@ labpt : num [1:2] -172.2 52.6
... 等等。
grd
有這樣的結構:
> str(grd)
Formal class 'SpatialPolygonsDataFrame' [package "sp"] with 5 slots
..@ data :'data.frame': 40680 obs. of 12 variables:
.. ..$ ID : int [1:40680] 361 362 363 364 365 366 367 368 369 370 ...
.. ..$ X_COORD : num [1:40680] -180 -178 -178 -176 -176 ...
.. ..$ Y_COORD : num [1:40680] 79.1 79.1 79.1 79.1 79.1 ...
.. ..$ ID_1 : Factor w/ 13713 levels "10","10000","10001",..: NA NA NA NA NA NA NA NA NA NA ...
.. ..$ grdID : int [1:40680] 1 2 3 4 5 6 7 8 9 10 ...
.. ..$ ROW : int [1:40680] 1 1 1 1 1 1 1 1 1 1 ...
.. ..$ COL : int [1:40680] 1 2 3 4 5 6 7 8 9 10 ...
.. ..$ AREA : num [1:40680] 12364 12364 12364 12364 12364 ...
.. ..$ PERIMETER : num [1:40680] 445 445 445 445 445 ...
.. ..$ MAJORITY : int [1:40680] 0 0 0 0 0 0 0 0 0 0 ...
.. ..$ PROP0_0062: num [1:40680] 0 0 0 0 0 0 0 0 0 0 ...
.. ..$ AREA_KM2 : num [1:40680] 0 0 0 0 0 0 0 0 0 0 ...
.. ..- attr(*, "data_types")= chr [1:12] "N" "N" "N" "C" ...
..@ polygons :List of 40680
.. ..$ :Formal class 'Polygons' [package "sp"] with 5 slots
.. .. .. ..@ Polygons :List of 1
.. .. .. .. ..$ :Formal class 'Polygon' [package "sp"] with 5 slots
.. .. .. .. .. .. ..@ labpt : num [1:2] -179.5 79.1
.. .. .. .. .. .. ..@ area : num 5.3
.. .. .. .. .. .. ..@ hole : logi FALSE
.. .. .. .. .. .. ..@ ringDir: int 1
.. .. .. .. .. .. ..@ coords : num [1:13, 1:2] -179 -180 -180 -180 -180 ...
.. .. .. ..@ plotOrder: int 1
.. .. .. ..@ labpt : num [1:2] -179.5 79.1
... 等等。
我從Roger Bivand那里找到了這個幫助,這對三個有問題的文件中的兩個有用 :
>slot(shape.input, "polygons") <- lapply(slot(shape.input, "polygons"), checkPolygonsHoles)
>range.grd.overlay <- grd[!is.na(over(grd, range)), ]@data$grdID # get gridcells of that overlay with range polygon
但對於第三個文件,修復不起作用。 R會凍結,直到我最終按下Esc,之后我會在嘗試制作空間疊加時得到相同的錯誤消息:
Error in createPolygonsComment(p) :
rgeos_PolyCreateComment: orphaned hole, cannot find containing polygon for hole at index 13
聲明:本站的技術帖子網頁,遵循CC BY-SA 4.0協議,如果您需要轉載,請注明本站網址或者原文地址。任何問題請咨詢:yoyou2525@163.com.