我们如何使用RHDF5软件包为HDF5文件中的数据集提供无限尺寸？

Question

Though it might seem similar to an already question: is-it-possible-to-update-dataset-dimensions-in-hdf5-file-using-rhdf5-in-r but they are not exactly same.

In RHDF5 documentation, it is written that we can define the maximum dimensions that a dataset can have at the time dataset is created using h5createDataset() (using maxdims parameter). But what if we don't know the dimensions of the dataset beforehand eg we might have a situation that the size of the dataset is continuously increasing and so, we have no idea about the maximum dimensions that a dataset can attain.

In the answer to the question mentioned above, it was mentioned that it can be done with the help of dataspace and HDF5 constants.

Can anyone please give some idea regarding how HDF5 constants and dataspace can be used to do so?

Answer 1

While doing some experimentation with the function h5createDataset() , I have found a way of doing this:

> library(rhdf5)

> fid <- H5Fcreate('test.h5')

> h5createGroup(fid,'1')
[1] TRUE

> h5createDataset(fid,'1/1',dims = c(2,2,2),maxdims = c(Inf,Inf,Inf))
[1] TRUE
Warning message:
  In H5Screate_simple(dims, maxdims) :
  NAs introduced by coercion to integer range

> arr <- array(c(1:8),c(2,2,2))

> h5write(arr,fid,'1/1')

> h5read(fid,'1/1')
, , 1

     [,1] [,2]
[1,]    1    3
[2,]    2    4

, , 2

     [,1] [,2]
[1,]    5    7
[2,]    6    8

Please correct me if I am wrong somewhere or if there is a better method to do so.