I've defined the next ArrayList:
ArrayList<ArrayList<String>> Elements
When I fill it up it goes like this:
[[AAA, AAG], [GAA, GAG], [GUA, GUC, GUG, GUU], [UUC, UUU], [GAA, GAG], [CCA, CCC, CCG, CCU], [CAC, CAU], [UAC, UAU], [UAC, UAU]]
I need to generate all possible combinations, starting always with the first position elements of the array, which in this case are: [AAA, AAG].
fi:
AAAGAAGUAUUCGAACCACACUACUAC
AAAGAAGUAUUCGAACCACACUACUAU
AAAGAAGUAUUCGAACCACACUAUUAC
Is there any reason why:
1) Set aside the first elements of your array.
2) Generate all combinations of the remainder of your array.
3) Add back the first elements to each combination.
Does not solve your problem?
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